PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc026284.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family ARF
Protein Properties Length: 585aa    MW: 66087.9 Da    PI: 6.7903
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc026284.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.95.3e-25122222198
                            EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                            f+kvlt sd++++g +++ +k+a+e+     + +++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF 
  Cse_sc026284.1_g010.1 122 FCKVLTASDTSTHGGFSVLRKHANEClppldMAEPTPTQELVAKDLHGTEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL 209
                            99****************************9555666779************************************************ PP

                            E-SSSEE..EEEEE- CS
                     B3  84 ldgrsefelvvkvfr 98 
                              + +++el+v+v+r
  Cse_sc026284.1_g010.1 210 --RGDNGELHVGVRR 222
                            ..3489999****98 PP
2Auxin_resp97.32.3e-32248327183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            a+ha+st++ F v+Y+Pr+  s+F++ ++k+ +++++ ++vGmRf m+fe+eds+err++Gt+vgv+dl+  +W+ S+WrsLk
  Cse_sc026284.1_g010.1 248 ASHALSTQTRFLVYYKPRT--SQFIIGLNKYIESINNGFTVGMRFNMRFEGEDSPERRFTGTIVGVEDLSG-QWECSNWRSLK 327
                            789***************6..9**********************************************665.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    
MDNQQSRFLS EGMEDMVYKE LWKACAGPLV EIPKHGERVF YFPQGHMEQL EASTNHELDQ  60
SIPNFNLKSK ILCRVVHTQL LAEQDTDEVY AQITLLPEQD QRDPTSPDKC VAEPPRPTVY  120
SFCKVLTASD TSTHGGFSVL RKHANECLPP LDMAEPTPTQ ELVAKDLHGT EWRFKHIFRG  180
QPRRHLLTTG WSTFVTSKRL VAGDSFVFLR GDNGELHVGV RRVAQQHNSM PSSVISSRSM  240
RLGVLATASH ALSTQTRFLV YYKPRTSQFI IGLNKYIESI NNGFTVGMRF NMRFEGEDSP  300
ERRFTGTIVG VEDLSGQWEC SNWRSLKVQW DEPTSIVRPE RVSPWEIEAY ASTIPTSLVQ  360
PMTPKNKRPR PPTNIPILGE REDRKGVSDW SVHSNMAQES TKLTKDSTNK PVDLKNPESV  420
SSCRLFGFDL KVAPKGDNII SEVSPSAERH ELAGISDQKS NPPSKDCIGV QNKQSTLSRS  480
RTKVQMQGVA VGRAVDLTML KGYDELIDEL EEMFEIKGKL RPRNQWEIVF TDDEGDMMLM  540
GDHPWQEFCS MVKRIFICSS QDVKKMTSGS KMQLSSSVEN EVSGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1367371KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.10.0ARF family protein