PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc026297.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family RAV
Protein Properties Length: 350aa    MW: 39347.3 Da    PI: 9.9789
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc026297.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.63.2e-1364112155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s++kGV   + +grW A+I++      ++r++lg+f  +eeAaka++ a ++++g
  Cse_sc026297.1_g020.1  64 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAAKAYDIAVQRFRG 112
                            689***9788.8*********3.....5************************998 PP
2B396.41.9e-30191283189
                            EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+k+ tpsdv+k++rlv+pk++ae+h    +g++ +++ l +ed+ +  W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+ 
  Cse_sc026297.1_g020.1 191 FQKIVTPSDVGKLNRLVIPKQHAEKHfpvqKGSTSKGVLLHFEDSGSTIWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDSVSFYS 278
                            99****************************88899****************************************************5 PP

                            -SSSE CS
                     B3  85 dgrse 89 
                            +   +
  Cse_sc026297.1_g020.1 279 STGPD 283
                            43344 PP
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    
MYTSCTYDKT TTSETISTIP QAVTTPPTGE TSLRRFGSGA NVVLDLESGV EVEAEAQSKK  60
LRSSRFKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEEEAA KAYDIAVQRF RGRDAVTNFP  120
QIDTNKKEAK MEASFLSNHS KSEIVDMLRK HTYNDELEQS KRSCTLQKTS PQTGSNNFSR  180
SGSIIQREHL FQKIVTPSDV GKLNRLVIPK QHAEKHFPVQ KGSTSKGVLL HFEDSGSTIW  240
RFRYSYWNSS QSYVLTKGWS RFVKEKNLKA GDSVSFYSST GPDKQLYIDS KPKMGSSGIT  300
NSQPIEPVQM LRLFGVNISS VSSCNGKRSN TEMDVLGFQN CKKQRVIDVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-131RAV family protein