PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc026878.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

CO-like

Protein Properties

Length: 425aa MW: 47976.5 Da PI: 4.6141

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc026878.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.8	9.1e-08	16	60	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 +r C+ + + +++++C ++ +lC++C + H+ H++v Cse_sc026878.1_g010.1 16 ARACDSCVRRRARWYCPADDAFLCQSCDGSVHSAnqlagrHERVL 60 578*****************************6678888888775 PP
2	CCT	67.9	2.7e-23	364	407	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ Cse_sc026878.1_g010.1 364 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRE 407 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MIAGTKTANA VGGKTARACD SCVRRRARWY CPADDAFLCQ SCDGSVHSAN QLAGRHERVL 60 LETGSSKLFG SGAVSPEPTW HKGLTRRART PRPRSKYSLK LEGKKDVVNS SAPLVPEIGV 120 LEASLLDDDD EEEELLYPLV PVFDHFEAEL CNASNEIDSG LNFIVENKQE ETCNLDELQG 180 FDLPTDDLEL LEFAADVESL LGKGFDDTSC RIDDLGLTNG YKEDGTNNIE LCFDENRVKV 240 EDKEVEAILG FDVDSTRETL DWDFGYDSTM MIDEEEEKKV VVGIEEEHVM GVSSDPCNEE 300 KVLRSSILLR LNYEDVINTW ADQRSPWTNG TRPELSSDGF WPDFMWTGNS NPSYGGVGRS 360 DGGREARVSR YREKRRTRLF SKKIRYEVRK LNAEKRPRMK GRFVKRETFE KPLSTSSFPT 420 YLIKN

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MIAGTKTANA VGGKTARACD SCVRRRARWY CPADDAFLCQ SCDGSVHSAN QLAGRHERVL  60
LETGSSKLFG SGAVSPEPTW HKGLTRRART PRPRSKYSLK LEGKKDVVNS SAPLVPEIGV  120
LEASLLDDDD EEEELLYPLV PVFDHFEAEL CNASNEIDSG LNFIVENKQE ETCNLDELQG  180
FDLPTDDLEL LEFAADVESL LGKGFDDTSC RIDDLGLTNG YKEDGTNNIE LCFDENRVKV  240
EDKEVEAILG FDVDSTRETL DWDFGYDSTM MIDEEEEKKV VVGIEEEHVM GVSSDPCNEE  300
KVLRSSILLR LNYEDVINTW ADQRSPWTNG TRPELSSDGF WPDFMWTGNS NPSYGGVGRS  360
DGGREARVSR YREKRRTRLF SKKIRYEVRK LNAEKRPRMK GRFVKRETFE KPLSTSSFPT  420
YLIKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	375	391	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	2e-88	CO-like family protein