PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc027028.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 388aa MW: 44681.1 Da PI: 7.81

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc027028.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	82	104	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + Lk+H + H Cse_sc027028.1_g020.1 82 CSfeGCGKTFIDAGALKKHSNIH 104 77779**************9988 PP
2	zf-C2H2	13.2	0.00026	109	133	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ +Cgk F ++s LkrH H Cse_sc027028.1_g020.1 109 HVCHyeNCGKKFLDSSKLKRHFLIH 133 79*******************8877 PP
3	zf-C2H2	21	8.9e-07	139	163	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk Fs nLk+H++tH Cse_sc027028.1_g020.1 139 FICPheGCGKAFSLDFNLKSHMKTH 163 78**********************9 PP
4	zf-C2H2	15.2	6e-05	169	193	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk++ + + Lk+H+++H Cse_sc027028.1_g020.1 169 HICPfrECGKRYAHEYKLKKHMMSH 193 68**********************6 PP
5	zf-C2H2	13.7	0.00018	239	264	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y Cp C+k + + + L+ H+r+ H Cse_sc027028.1_g020.1 239 YACPydSCDKAYIHEYKLNLHLRReH 264 89*********************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MEHHSFHNLF ERRPIVNKKP SKIPTVKWYK QWVPQDVVAT GGKCMVMKWV TEAQMKALKQ 60 KKENPVTAEP EPEPTTEVLF LCSFEGCGKT FIDAGALKKH SNIHGERQHV CHYENCGKKF 120 LDSSKLKRHF LIHTGERDFI CPHEGCGKAF SLDFNLKSHM KTHSQENYHI CPFRECGKRY 180 AHEYKLKKHM MSHHEKNNMA ELPSKYVNIQ VQPVEKPPPR PPKMASTATY ATASYDRPYA 240 CPYDSCDKAY IHEYKLNLHL RREHPGHLPE ENPKNTSRNK NNNNGDMDAG SDHDIYAVKR 300 GNANSQKQNR PKPNIRLPPA KVAKHKSAPA SVAIPSVAKK QLYAVAKPVH EDEDSEETEE 360 DRDDDPEDGW RYRGNDNDDD DEETDYED

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MEHHSFHNLF ERRPIVNKKP SKIPTVKWYK QWVPQDVVAT GGKCMVMKWV TEAQMKALKQ  60
KKENPVTAEP EPEPTTEVLF LCSFEGCGKT FIDAGALKKH SNIHGERQHV CHYENCGKKF  120
LDSSKLKRHF LIHTGERDFI CPHEGCGKAF SLDFNLKSHM KTHSQENYHI CPFRECGKRY  180
AHEYKLKKHM MSHHEKNNMA ELPSKYVNIQ VQPVEKPPPR PPKMASTATY ATASYDRPYA  240
CPYDSCDKAY IHEYKLNLHL RREHPGHLPE ENPKNTSRNK NNNNGDMDAG SDHDIYAVKR  300
GNANSQKQNR PKPNIRLPPA KVAKHKSAPA SVAIPSVAKK QLYAVAKPVH EDEDSEETEE  360
DRDDDPEDGW RYRGNDNDDD DEETDYED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	1e-122	C2H2 family protein