PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc027033.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 138aa MW: 15369.2 Da PI: 8.4742

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc027033.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23	1.4e-07	67	82	11	26
GTS--TTTTT-SS-SS CS zf-CCCH 11 rtGtCkyGdrCkFaHg 26 rtG C+yGd+Ck+ H+ Cse_sc027033.1_g010.1 67 RTGSCPYGDSCKYFHP 82 9************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence
MPLGKYYCDY CDKEFQDTPF HRKRHIQGIQ HQRAKALWYS SIFTQPQTPD SNHIPSATPG 60 VCNRIVRTGS CPYGDSCKYF HPSQNVPSNS QGFTGGMGGV MLGNLPPSLR PPQEGGYPSL 120 PFIYSPPRRL PAHSGDDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	2e-36	C3H family protein