PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc027804.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family Whirly
Protein Properties Length: 233aa    MW: 25528 Da    PI: 10.0839
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc027804.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly154.82.8e-48651942139
                 Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGk 89 
                            +yk+kaal+  +++ptf+++ sg +k++r+G+++l++ +a++erkyd ekkq fals+tev++++++++ ++ effhdpa+++s +G+
  Cse_sc027804.1_g020.1  65 IYKGKAALSAAPILPTFSKMGSGCTKVDRRGTIMLTFRPAIGERKYDSEKKQLFALSVTEVGSFISMGPGDTREFFHDPAMQSSAAGQ 152
                            9*************************************************************************************** PP

                 Whirly  90 vrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                            vrk+l+++P++dG        v n+++k+ne+f+vPv+ aefav+r++++
  Cse_sc027804.1_g020.1 153 VRKSLSIKPIADG--------VANNILKTNERFTVPVTSAEFAVMREAFS 194
                            ************9........78999*********************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MNPRNTMKLS NLLQNSGNKF LQCKFRDEMA GNGFNLTSSA GYSTARQSYD ADGKISKRIF  60
ADYHIYKGKA ALSAAPILPT FSKMGSGCTK VDRRGTIMLT FRPAIGERKY DSEKKQLFAL  120
SVTEVGSFIS MGPGDTREFF HDPAMQSSAA GQVRKSLSIK PIADGVANNI LKTNERFTVP  180
VTSAEFAVMR EAFSFALPHI MGWAHSTNQL PDSVGLDSSK VHQPLGSASE WDR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.15e-73Whirly family protein