PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc027850.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family NF-YC
Protein Properties Length: 261aa    MW: 29360.3 Da    PI: 6.4329
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc027850.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1757.9e-55821851101
                  NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 
                            ql++fw++q   ie++t fknh+lPlarikki+kadedv+misaeaP+++++ace+fileltlrsw+h+eenkrrtl+k+diaa++tr
  Cse_sc027850.1_g010.1  82 QLQNFWANQyqeIEQTTHFKNHSLPLARIKKIMKADEDVRMISAEAPIIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAATITR 169
                            89******99999*************************************************************************** PP

                  NF-YC  86 tdifdflvdivprdel 101
                            tdifdflvdivpr++l
  Cse_sc027850.1_g010.1 170 TDIFDFLVDIVPREDL 185
                            *************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MDQQGHGQVL GMGVVGSSAQ MPYNMAPYPP NQMMGIVPHA SVGGSVSPLQ TSGLTSPPGQ  60
LAQQQLAYHH IHQQQQQQLH QQLQNFWANQ YQEIEQTTHF KNHSLPLARI KKIMKADEDV  120
RMISAEAPII FARACEMFIL ELTLRSWNHT EENKRRTLQK NDIAATITRT DIFDFLVDIV  180
PREDLKDEII ASTVPRGGPL PVGAPTEGLS YYYMPPPQVG ASGMYMGKHV DPQALYGQHP  240
RPYMAQPMWP QQQQQEPQED A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155161RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.31e-76NF-YC family protein