PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc027891.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 259aa    MW: 29741.6 Da    PI: 5.5076
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc027891.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.81e-161153345
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                           i+++ +r++tf +R++g++K A ELS+LCd++v++ii s +++
  Cse_sc027891.1_g020.1 11 INDSKKRKITFLRRKEGLIKTARELSTLCDIDVSMIICSDHQE 53
                           899************************************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MGRVKTPMEL INDSKKRKIT FLRRKEGLIK TARELSTLCD IDVSMIICSD HQESPEIFPQ  60
DPVKLNDTIK AYKRKRVGDP GKIKSYGLYD YWNDRKNKTE DELAKVKKRN LEAKLPTSFE  120
CLNNSSEEQL RDFAYGLGIP IDEVKTEMPL LNNTNPITMM THFDYNYNDN KGIVSDNHVE  180
SSGSSNSSDV DNGYYPSVPM DQIFFGTDQR LMEALNTSSM KSEDVKDRYD GPKFDLKPEK  240
MQQLEQPQNM LSENVAITK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.21e-11M-type_MADS family protein