PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc027996.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family NF-YC
Protein Properties Length: 258aa    MW: 28865.7 Da    PI: 5.8194
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc027996.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.69.9e-55791821101
                  NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 
                            ql++fw++q   i+++tdfknh+lPlarikki+kadedv+misaeaP ++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+tr
  Cse_sc027996.1_g040.1  79 QLQNFWTNQyqeIDQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPLIFARACEIFILELTLRSWNHTEENKRRTLQKNDIAAAITR 166
                            89******999999************************************************************************** PP

                  NF-YC  86 tdifdflvdivprdel 101
                            tdifdflvdivpr++l
  Cse_sc027996.1_g040.1 167 TDIFDFLVDIVPREDL 182
                            *************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MDQQGHGQVL GMGAVGSSAQ IPYNMAPYPP NQMMGIVPPA SVGGSVPPSQ TSGLTSPPAQ  60
QQLAYHHIHQ QQQQQLHQQL QNFWTNQYQE IDQTTDFKNH SLPLARIKKI MKADEDVRMI  120
SAEAPLIFAR ACEIFILELT LRSWNHTEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRE  180
DLKDEIIAST VPRGGPLPVG APTEGLSYYY MPPPQVGASG MYMGKPVDPQ ALYGQHPRPY  240
MAQPMWPQQQ QQEPQEDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.39e-77NF-YC family protein