PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc028194.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 1346aa MW: 148892 Da PI: 5.8993

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc028194.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.7	6.4e-06	1322	1344	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+ f+++G Ck G+ C + H++ Cse_sc028194.1_g010.1 1322 RVCK-FYESGRCKKGSACAYLHPK 1344 6799.9999*************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1346 aa Download sequence
MEVQTSSQSQ PVDGGVTAAA EAAAVVVGNG VGEVVKRKRG RPPRAQPKQQ PVAKKSKEVV 60 DDDEDVCFIC FDGGSLVLCD RKGCPKAYHP ACIKRDEAFF RSKAKWNCGW HICSMCEKTA 120 HHMCYTCTYS LCKGCIKKSD YVCVRGDKGF CTVCMKTIML IENKDAAGKV DFDDKTSWEY 180 LFKVYWVYMK GKLSLTLDEL TQAKNPWKIS DTIASIEPTG YVSASGRRSI TAELSLGNME 240 ANESKRRKTD EQTNGPHKES PSMDGPKEWA SKELLDFVAH MKNGDTAVLS QFDVQALLLE 300 YIKRNNLRDP RKKTQIVCDS MLKNLFGKAR VGNIEMLKLL ELHFLLKEES QKNTVNGTVK 360 EGETVKEGVT VKQGETDCKT DDNNTNIDNN NNNNNKMVVV ACKERKSNRK AEKRITHNKL 420 DEYAAIDVHN MSLIYMRRNV MESLIEDREK FHEKVVGSIV QIRISGSDQK DDMYRLVQVV 480 GTTKVDVPYK IGDKSVDIML EVSNLEKKET VSIDTISNQE LSEDECRRMR ESVRCGLVRC 540 FTVGEIQEKA FALQSVLIDD RLEIERVRLN QLRDRASENK QKKIYPLMTK LKRLKTPEER 600 ERQLREIPEV HSDPKMNPDY ESDDTEEYFN NEDGEHPKPE FPWVSDTNTT TTKKAAESLT 660 SDNQPRDSSG TTYPNLQEDT SKLNTGKDPV GLSGLRTPQM EADCDGPTVS KSNPEAAVSS 720 SLPKDTVDMW HYRDPSGNVQ GPFSVVQLRL WSTSGYFPPD MRIWATREAD SLLLNKVLQE 780 QIHNYNSLLP KSVAPNNKVE NQIKSVDVSS AIQTSTTSVN LEILPNNLNC DPPSAAILTK 840 SNVTAEHLDT RNVPDINQHV PSVSIVADSA PVDIHLPSSV LKKDIHDNKK VQDSIEKEET 900 KLVVQDSGNP PTWSTSLSLE VGGAQLSETA NDWAVKPVEW DTSHVPVSSL NHQVATSNPQ 960 MDQIADLPSW HGLGETIEFS TLAEESVSDL LAEVDAMESQ NCVPSPTSRR NSFLEDLFNG 1020 SIDDFSPTGD QGTRSDGFSS SADIQLSRQS TGLPFSFGLE TKPNSDASIP QTTNLAVSIP 1080 QPTNSDNMGF KWAEMGGAML HPPRQNMIDL NDYTRAEADE AERDDQIEEK ATNHMVGSNS 1140 KEKEGESVNG HVSETKLVGG FQEAEEEEGE FVQPELAPPP PPPPPPPPTP PSLPPPPPPS 1200 SLPPLLPLPP PPPPPTMGFD VVDSRRSGSG KPSHGTTSAG RVHTHSNSSR SGSVARDSHH 1260 RRSSGGGDRY NSNSPRERGH HVEDSGYNRS GRSSWSRQSS FGAGSGGGSG SGYSRPPSKV 1320 QRVCKFYESG RCKKGSACAY LHPKDR

Sequence ? help Back to Top

Protein Sequence Length: 1346 aa Download sequence

MEVQTSSQSQ PVDGGVTAAA EAAAVVVGNG VGEVVKRKRG RPPRAQPKQQ PVAKKSKEVV  60
DDDEDVCFIC FDGGSLVLCD RKGCPKAYHP ACIKRDEAFF RSKAKWNCGW HICSMCEKTA  120
HHMCYTCTYS LCKGCIKKSD YVCVRGDKGF CTVCMKTIML IENKDAAGKV DFDDKTSWEY  180
LFKVYWVYMK GKLSLTLDEL TQAKNPWKIS DTIASIEPTG YVSASGRRSI TAELSLGNME  240
ANESKRRKTD EQTNGPHKES PSMDGPKEWA SKELLDFVAH MKNGDTAVLS QFDVQALLLE  300
YIKRNNLRDP RKKTQIVCDS MLKNLFGKAR VGNIEMLKLL ELHFLLKEES QKNTVNGTVK  360
EGETVKEGVT VKQGETDCKT DDNNTNIDNN NNNNNKMVVV ACKERKSNRK AEKRITHNKL  420
DEYAAIDVHN MSLIYMRRNV MESLIEDREK FHEKVVGSIV QIRISGSDQK DDMYRLVQVV  480
GTTKVDVPYK IGDKSVDIML EVSNLEKKET VSIDTISNQE LSEDECRRMR ESVRCGLVRC  540
FTVGEIQEKA FALQSVLIDD RLEIERVRLN QLRDRASENK QKKIYPLMTK LKRLKTPEER  600
ERQLREIPEV HSDPKMNPDY ESDDTEEYFN NEDGEHPKPE FPWVSDTNTT TTKKAAESLT  660
SDNQPRDSSG TTYPNLQEDT SKLNTGKDPV GLSGLRTPQM EADCDGPTVS KSNPEAAVSS  720
SLPKDTVDMW HYRDPSGNVQ GPFSVVQLRL WSTSGYFPPD MRIWATREAD SLLLNKVLQE  780
QIHNYNSLLP KSVAPNNKVE NQIKSVDVSS AIQTSTTSVN LEILPNNLNC DPPSAAILTK  840
SNVTAEHLDT RNVPDINQHV PSVSIVADSA PVDIHLPSSV LKKDIHDNKK VQDSIEKEET  900
KLVVQDSGNP PTWSTSLSLE VGGAQLSETA NDWAVKPVEW DTSHVPVSSL NHQVATSNPQ  960
MDQIADLPSW HGLGETIEFS TLAEESVSDL LAEVDAMESQ NCVPSPTSRR NSFLEDLFNG  1020
SIDDFSPTGD QGTRSDGFSS SADIQLSRQS TGLPFSFGLE TKPNSDASIP QTTNLAVSIP  1080
QPTNSDNMGF KWAEMGGAML HPPRQNMIDL NDYTRAEADE AERDDQIEEK ATNHMVGSNS  1140
KEKEGESVNG HVSETKLVGG FQEAEEEEGE FVQPELAPPP PPPPPPPPTP PSLPPPPPPS  1200
SLPPLLPLPP PPPPPTMGFD VVDSRRSGSG KPSHGTTSAG RVHTHSNSSR SGSVARDSHH  1260
RRSSGGGDRY NSNSPRERGH HVEDSGYNRS GRSSWSRQSS FGAGSGGGSG SGYSRPPSKV  1320
QRVCKFYESG RCKKGSACAY LHPKDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51120.1	0.0	C3H family protein