PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc029007.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family LBD
Protein Properties Length: 140aa    MW: 15992.3 Da    PI: 8.7486
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc029007.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.52.2e-3824123199
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqql 87 
                            aCaaC++ rrkC +dC++apyfp +q+++f+n+hklFG+s ++ ++ ++ ++e+r+dam+s+ yeA+arar+Pv G+++++l+l+qql
  Cse_sc029007.1_g010.1  24 ACAACRHIRRKCGPDCIFAPYFPLSQKEQFKNAHKLFGVSFITTTMGSInDPEQRDDAMASIKYEADARAREPVGGCTRIVLELEQQL 111
                            7**********************************************9977888********************************** PP

                 DUF260  88 eqlkaelallke 99 
                            ++++ el+ +k+
  Cse_sc029007.1_g010.1 112 REAEDELKFVKQ 123
                            *******99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    
MSTQNNHPNT PTQPTPVRKR TKPACAACRH IRRKCGPDCI FAPYFPLSQK EQFKNAHKLF  60
GVSFITTTMG SINDPEQRDD AMASIKYEAD ARAREPVGGC TRIVLELEQQ LREAEDELKF  120
VKQLLAFYKP VEEDRKPDIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-33LBD family protein