PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc029081.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family YABBY
Protein Properties Length: 214aa    MW: 24105.5 Da    PI: 7.8942
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc029081.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2274.8e-70171783170
                  YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqlla.aeshldeslkee....lleelkveeenlksn 85 
                            +   seq+CyvqCnfC+tilavsvP +slf +vtvrCGhCt+llsvn++   +ll+ a +hl+   +      ++ee ++++   +s 
  Cse_sc029081.1_g010.1  17 LSPPSEQLCYVQCNFCDTILAVSVPCSSLFATVTVRCGHCTNLLSVNMRA--HLLPtAANHLQLGHNFFshqsIMEEIRNNR---SSL 99 
                            56789****************************************77654..444414555543332221011222222222...222 PP

                  YABBY  86 vekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                             +++  +            + +e+ ++p v+rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ihfgl
  Cse_sc029081.1_g010.1 100 LMNQPIPDPF------GPVRVDELLKPPVVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 178
                            2333333333......3445678899999******************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MSSSAPFTPE HHQHHHLSPP SEQLCYVQCN FCDTILAVSV PCSSLFATVT VRCGHCTNLL  60
SVNMRAHLLP TAANHLQLGH NFFSHQSIME EIRNNRSSLL MNQPIPDPFG PVRVDELLKP  120
PVVNRPPEKR QRVPSAYNRF IKEEIQRIKA GNPDISHREA FSAAAKNWAH FPHIHFGLMP  180
DQVLKKPNVC QQEGDDLHIK DNFLTTGNVG ISPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.13e-82YABBY family protein