PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc029334.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 377aa MW: 42398.6 Da PI: 6.7058

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc029334.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.3e-05	215	234	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Cse_sc029334.1_g020.1 215 FSCPVCFKTFNRYNNMQMHM 234 89*****************9 PP
2	zf-C2H2	14.4	0.00011	299	321	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Cse_sc029334.1_g020.1 299 FMCRKCGKAFAVRGDWRTHEKNC 321 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MSDPYYSNLY SKWFKLDQYS NNSNTNLPHQ VHHHQNPQSY YYNTFQSSYP NIRTVSTFGF 60 SPSTCVTTPY PTPPPSPPLR EALPLLSLSP SRKQEDKQQP QQRSCNSTTR HDIEEDDGDD 120 DEDDEDNDDD NETGVTVALH IGLPNASAAD LASLISNSSN SSSNTSEIIV ANSNKGSKEG 180 DGDEASLGYS SVSRLNKGQY WIPTPSQILI GPTQFSCPVC FKTFNRYNNM QMHMWGHGSQ 240 YRKGPESLRG TQPTGMLKLP CYCCAPGCRN NIDHPRSKPL KDFRTLQTHY KRKHGIKPFM 300 CRKCGKAFAV RGDWRTHEKN CGKLWYCTCG SDFKHKRSLK DHIKAFGHGH AAYGVNGFEE 360 DDELASEIEQ DDDDGNS

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MSDPYYSNLY SKWFKLDQYS NNSNTNLPHQ VHHHQNPQSY YYNTFQSSYP NIRTVSTFGF  60
SPSTCVTTPY PTPPPSPPLR EALPLLSLSP SRKQEDKQQP QQRSCNSTTR HDIEEDDGDD  120
DEDDEDNDDD NETGVTVALH IGLPNASAAD LASLISNSSN SSSNTSEIIV ANSNKGSKEG  180
DGDEASLGYS SVSRLNKGQY WIPTPSQILI GPTQFSCPVC FKTFNRYNNM QMHMWGHGSQ  240
YRKGPESLRG TQPTGMLKLP CYCCAPGCRN NIDHPRSKPL KDFRTLQTHY KRKHGIKPFM  300
CRKCGKAFAV RGDWRTHEKN CGKLWYCTCG SDFKHKRSLK DHIKAFGHGH AAYGVNGFEE  360
DDELASEIEQ DDDDGNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-133	C2H2 family protein