PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc029815.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28129.6 Da    PI: 9.4069
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc029815.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.34.8e-291059251
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           rien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifss+ klye++s
  Cse_sc029815.1_g010.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSSRSKLYEFAS 59
                           8***********************************************86 PP
2K-box48.73.3e-1782148975
                  K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 
                             + ++ ++++q +a + keie L+  +R++lGe+L+s +++eL q+eqqLe+s+ +iR++K + l +
  Cse_sc029815.1_g010.1  82 PCPEDVQHMRQLAADMAKEIELLEVAKRKILGEGLGSSTVEELLQIEQQLERSVCSIRARKLQPLPT 148
                            566789*******************************************************987755 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MVRGKTQLRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSS RSKLYEFASS  60
SMKETVERYR DHVKETRIQN SPCPEDVQHM RQLAADMAKE IELLEVAKRK ILGEGLGSST  120
VEELLQIEQQ LERSVCSIRA RKLQPLPTTI TARPPPPPPP IITHRMLVMQ VYGEKVEQLQ  180
SKEKMRRAEN AELNEKYLQM IAGAVERDGK FMDLEEEDIS DVETELFIGQ PKREIKKNQR  240
KSFM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-62MIKC_MADS family protein