PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc030208.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

HD-ZIP

Protein Properties

Length: 349aa MW: 39952.3 Da PI: 4.6561

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc030208.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.5e-19	132	185	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ +++ +LAk++gL+ rqV +WFqNrRa++k Cse_sc030208.1_g010.1 132 KKRRLTVDQVRFLEKSFELDNKLEPDRKIQLAKEIGLQPRQVAIWFQNRRARWK 185 56689************************************************9 PP
2	HD-ZIP_I/II	125.9	1.8e-40	131	223	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ekkrrl+ +qv++LE+sFe ++kLep+rK +la+e+glqprqva+WFqnrRAR+ktkqlEkdy+ L+++y++lk++ e+L ke+e+L+ Cse_sc030208.1_g010.1 131 EKKRRLTVDQVRFLEKSFELDNKLEPDRKIQLAKEIGLQPRQVAIWFQNRRARWKTKQLEKDYDDLQESYNKLKANYENLVKEKEKLK 218 69************************************************************************************** PP HD-ZIP_I/II 89 eelke 93 +e++e Cse_sc030208.1_g010.1 219 SEVDE 223 99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MAARSFLYGG GGGGGGGDGS VFLTNKRVHG DSFFAPRSSS FQGTRSMVSF DDRGNGSGGQ 60 FFQSFDHEDN GDDEYDDYLQ QPEKKRRLTV DQVRFLEKSX RGNGSGGHFF QSFDHEDNGD 120 DEYDDYLQQP EKKRRLTVDQ VRFLEKSFEL DNKLEPDRKI QLAKEIGLQP RQVAIWFQNR 180 RARWKTKQLE KDYDDLQESY NKLKANYENL VKEKEKLKSE VDELSDKLLL QEKGTSDSSS 240 TKSPFESLLH EQILDHASEE HVSKKMKMGD GQEGNFTAKE LGDSSYVFEQ EQSEGSLDEE 300 TNFSKMFLPS VDGYTSPKIE NNEYRDPHSV NSYYLGLPGD DQAFGFWSY

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MAARSFLYGG GGGGGGGDGS VFLTNKRVHG DSFFAPRSSS FQGTRSMVSF DDRGNGSGGQ  60
FFQSFDHEDN GDDEYDDYLQ QPEKKRRLTV DQVRFLEKSX RGNGSGGHFF QSFDHEDNGD  120
DEYDDYLQQP EKKRRLTVDQ VRFLEKSFEL DNKLEPDRKI QLAKEIGLQP RQVAIWFQNR  180
RARWKTKQLE KDYDDLQESY NKLKANYENL VKEKEKLKSE VDELSDKLLL QEKGTSDSSS  240
TKSPFESLLH EQILDHASEE HVSKKMKMGD GQEGNFTAKE LGDSSYVFEQ EQSEGSLDEE  300
TNFSKMFLPS VDGYTSPKIE NNEYRDPHSV NSYYLGLPGD DQAFGFWSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	180	188	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	8e-37	HD-ZIP family protein