PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc030257.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 383aa MW: 43103.3 Da PI: 8.2277

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc030257.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.3e-06	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Cse_sc030257.1_g010.1 58 YVCEICNQGFQRDQNLQMHRRRH 80 9*********************9 PP
2	zf-C2H2	15.7	4.3e-05	135	157	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ Cse_sc030257.1_g010.1 135 WVCDKCSKGYAVQSDYKAHLKTC 157 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MLENNHHNLT GPSSTSDPFV SPDNGLANKR KRRPAGTPDP DAEVVSLSPK TLLESDRYVC 60 EICNQGFQRD QNLQMHRRRH KVPWKLLKRE SPEVKKRVFV CPEPSCLHHD PCHALGDLVG 120 IKKHFRRKHS NDKQWVCDKC SKGYAVQSDY KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ 180 DACTVRRVHP DLPAFQQACS SRTASSTSPS SDTNLSNFPS LQQRIPQLVP QETPFAQTQD 240 THTQNNLELQ LLPSSSLYEQ HNDNVTNLKL SIGSGISFNK EEERMKMAIA EKEFADEARQ 300 QAKRQIETAE LEFANAKRIR KQAQAELERA KLLRDQATKK ISSTILEITC HSCRQQFQTA 360 ASNTGAITTA DEMSSAVTEG EGD

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MLENNHHNLT GPSSTSDPFV SPDNGLANKR KRRPAGTPDP DAEVVSLSPK TLLESDRYVC  60
EICNQGFQRD QNLQMHRRRH KVPWKLLKRE SPEVKKRVFV CPEPSCLHHD PCHALGDLVG  120
IKKHFRRKHS NDKQWVCDKC SKGYAVQSDY KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ  180
DACTVRRVHP DLPAFQQACS SRTASSTSPS SDTNLSNFPS LQQRIPQLVP QETPFAQTQD  240
THTQNNLELQ LLPSSSLYEQ HNDNVTNLKL SIGSGISFNK EEERMKMAIA EKEFADEARQ  300
QAKRQIETAE LEFANAKRIR KQAQAELERA KLLRDQATKK ISSTILEITC HSCRQQFQTA  360
ASNTGAITTA DEMSSAVTEG EGD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	34	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-145	C2H2 family protein