PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc030305.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 384aa MW: 40618.6 Da PI: 7.235

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc030305.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.8	3.7e-08	93	117	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ Cse_sc030305.1_g020.1 93 FKTKLCCKFRA-GTCPYITNCNFAHS 117 69*******.***********8 PP
2	zf-CCCH	18.5	3.7e-06	167	192	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ Cse_sc030305.1_g020.1 167 YKGRHCKKFYTEEGCPYGDNCTFLHD 192 77888********************7 PP
3	zf-CCCH	44.3	2.9e-14	266	291	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + +tG+C++G++C+FaHg Cse_sc030305.1_g020.1 266 WKTRICNKWEQTGYCPFGSKCHFAHG 291 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MDYGRESGNV VQIVTGGSKS GGDYWGDQPV WATEDEYGVW DREASVDNNS NSNYDGRQSQ 60 TRSGSETPNK KRNGQGGDAQ ATSRSKAIGK MFFKTKLCCK FRAGTCPYIT NCNFAHSIEE 120 LRRPPPNWQE IVAAHEEERG VTSEPREEFQ IPSLGSSSFT VDSQRSYKGR HCKKFYTEEG 180 CPYGDNCTFL HDEQSKARES VVISLGPGSG GGYGGAGGGG SGGGVGSGGG GGVVSGGGGG 240 GGGTVIVVGG GADAAGSNSL LKPSNWKTRI CNKWEQTGYC PFGSKCHFAH GAAELHRYGG 300 GLVDIDAKDS PTSMDPNKQG MMPSKTPIET IVAAGPSAAH SDGYHLGAPS RLPGVIPRTG 360 HRFQKWKGPD KISRIYGDWI DDIE

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MDYGRESGNV VQIVTGGSKS GGDYWGDQPV WATEDEYGVW DREASVDNNS NSNYDGRQSQ  60
TRSGSETPNK KRNGQGGDAQ ATSRSKAIGK MFFKTKLCCK FRAGTCPYIT NCNFAHSIEE  120
LRRPPPNWQE IVAAHEEERG VTSEPREEFQ IPSLGSSSFT VDSQRSYKGR HCKKFYTEEG  180
CPYGDNCTFL HDEQSKARES VVISLGPGSG GGYGGAGGGG SGGGVGSGGG GGVVSGGGGG  240
GGGTVIVVGG GADAAGSNSL LKPSNWKTRI CNKWEQTGYC PFGSKCHFAH GAAELHRYGG  300
GLVDIDAKDS PTSMDPNKQG MMPSKTPIET IVAAGPSAAH SDGYHLGAPS RLPGVIPRTG  360
HRFQKWKGPD KISRIYGDWI DDIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-69	C3H family protein