PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc030368.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 409aa MW: 46752.4 Da PI: 9.8106

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc030368.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47	8.6e-15	103	205	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...............tekerrtraetrtgCkaklkvkkek. 72 ++Y+ YA + F vrks skk ng++t++ Cs+ gk+++ ++ ++k++r++++t t+Ck ++ +k Cse_sc030368.1_g020.1 103 NMYKVYAAKGRFGVRKSGSKKW--NGQVTHKYVICSRGGKPRKMAETntlnedvqendnvdgKTKRKRRSSTTLTDCKVMICLKVIAg 188 58*************99988..999***********999999********99888899999999********99 PP FAR1 73 dgkwevtkleleHnHel 89 ++ + +++ ++HnH+l Cse_sc030368.1_g020.1 189 TNMYSLYDWTKNHNHPL 205 *************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MQAFERMKIV YRDLRVKHNN VKNKIFSPNY LENDTTVSNF GASAASTLET AAGSAAKVDV 60 DVYDFDPEFI PTPNGSSYWV PNVPLDEKPK KGAVFHTYEE AVNMYKVYAA KGRFGVRKSG 120 SKKWNGQVTH KYVICSRGGK PRKMAETNTL NEDVQENDNV DGKTKRKRRS STTLTDCKVM 180 ICLKVIAGTN MYSLYDWTKN HNHPLIVQSN MDLSRARRKL QYGDYMFIHR TSLTNIGAQK 240 AHRLRVALLG GFDKVRGMPV DWSNFRRAMN LFIGDKDAQM LVDKMTKRKE HVPQLSFYHH 300 TIEKKLCHML WADETMKCNY VAFSDVVSFD ATFETNKYNM TFVPFTGVDH HQKCVTFGAA 360 LLSDEKHESY YWMLDSFLKT HGKQPPLALT DQDAALRKAF FTGFSGFPS

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MQAFERMKIV YRDLRVKHNN VKNKIFSPNY LENDTTVSNF GASAASTLET AAGSAAKVDV  60
DVYDFDPEFI PTPNGSSYWV PNVPLDEKPK KGAVFHTYEE AVNMYKVYAA KGRFGVRKSG  120
SKKWNGQVTH KYVICSRGGK PRKMAETNTL NEDVQENDNV DGKTKRKRRS STTLTDCKVM  180
ICLKVIAGTN MYSLYDWTKN HNHPLIVQSN MDLSRARRKL QYGDYMFIHR TSLTNIGAQK  240
AHRLRVALLG GFDKVRGMPV DWSNFRRAMN LFIGDKDAQM LVDKMTKRKE HVPQLSFYHH  300
TIEKKLCHML WADETMKCNY VAFSDVVSFD ATFETNKYNM TFVPFTGVDH HQKCVTFGAA  360
LLSDEKHESY YWMLDSFLKT HGKQPPLALT DQDAALRKAF FTGFSGFPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-31	FAR1 family protein