PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc030818.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

M-type_MADS

Protein Properties

Length: 388aa MW: 42871 Da PI: 5.7223

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc030818.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	67.4	1.4e-21	22	70	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie+++ rqvtfskRr+g++KKA+EL+vL++ae a+++ s+ g+ y + Cse_sc030818.1_g030.1 22 KKIEETTSRQVTFSKRRTGLFKKASELCVLTGAEMAILVQSPGGHCYAF 70 68*******************************************9988 PP
2	SRF-TF	65.5	5.6e-21	284	332	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie+++ rqvtfskRr+g++KKA+EL+vL++ae a+++ s+ g y + Cse_sc030818.1_g030.1 284 KKIEETTSRQVTFSKRRTGLFKKASELCVLTGAEMAILVQSPGGLCYAF 332 68****************************************9998877 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MNFSEGNTMK QQNKGRKKIP IKKIEETTSR QVTFSKRRTG LFKKASELCV LTGAEMAILV 60 QSPGGHCYAF GHPSVDAMEK RKYELIQQEK IGNSSGIPWY EQDIEGMEVE ELEQFLAALV 120 ELKRKVLVRA DDLANMESAS MLSLGPRMWN NLPNTFDNAP LNMQPFGDGI KINGLDFGDG 180 IKIENNTMSG PTNGLDFGDG IKFENNTMNG PTNGLDFGAG IKFENNGMIG PSNAPVFGDG 240 NNHENNTMNG PTNDHLDFGD LVAMNVSDVY TMKKNTGHKK IPIKKIEETT SRQVTFSKRR 300 TGLFKKASEL CVLTGAEMAI LVQSPGGLCY AFGHPSVDAV IDRYMNNTND DNNASMSSKQ 360 PSLTEDNQHY AELSXEEEAR VDSTRKNR

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MNFSEGNTMK QQNKGRKKIP IKKIEETTSR QVTFSKRRTG LFKKASELCV LTGAEMAILV  60
QSPGGHCYAF GHPSVDAMEK RKYELIQQEK IGNSSGIPWY EQDIEGMEVE ELEQFLAALV  120
ELKRKVLVRA DDLANMESAS MLSLGPRMWN NLPNTFDNAP LNMQPFGDGI KINGLDFGDG  180
IKIENNTMSG PTNGLDFGDG IKFENNTMNG PTNGLDFGAG IKFENNGMIG PSNAPVFGDG  240
NNHENNTMNG PTNDHLDFGD LVAMNVSDVY TMKKNTGHKK IPIKKIEETT SRQVTFSKRR  300
TGLFKKASEL CVLTGAEMAI LVQSPGGLCY AFGHPSVDAV IDRYMNNTND DNNASMSSKQ  360
PSLTEDNQHY AELSXEEEAR VDSTRKNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-23	M-type_MADS family protein