PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc030886.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 444aa MW: 49766.7 Da PI: 5.1784

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc030886.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.4	1.6e-13	169	211	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +eEd +++ +v+ +G g+W++++++ g++R++k+c++rw +yl Cse_sc030886.1_g010.1 169 AEEDAKILAYVASHGIGNWTLVPQKAGLNRCGKSCRLRWTNYL 211 59***************************************97 PP
2	Myb_DNA-binding	48.6	1.9e-15	219	260	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T++E++l++++++ G++ W++Ia+ ++ gRt++++k++w++ Cse_sc030886.1_g010.1 219 SFTPDEEDLILRYHQAIGSR-WSLIAQQLP-GRTDNDVKNHWNT 260 79****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MVCLLSCNAF LKDEVVAGVE SRISAWTFLP VENGESMQIL HYENGQKYEP HWDYFHDKAN 60 QALGGHRIAT VLMYLSNVQK VKPKKGDALR FFSLHPNATT DVLSLHGSCP VIEGEKWSAT 120 KWIHVRNFDK PDDTSDECKD ENVNCSTWAA SGECIKNPVY MVGSAEGLAE EDAKILAYVA 180 SHGIGNWTLV PQKAGLNRCG KSCRLRWTNY LRPDLKHDSF TPDEEDLILR YHQAIGSRWS 240 LIAQQLPGRT DNDVKNHWNT KLKKKLSKMG IDPITHKPFG QLLSDYGNIN DIIPPNMRPS 300 DQRHQEPSEF SHADSSLTMM DPYQEPQTPM SLMPAHFQVI NEAASSSTSS PAASIVQVNL 360 PSSPSVWSDY LVGDQEQECT NESDLGILPT KVENLNNYSG VGVDHTKNSL DVATTSVSFV 420 ESILNRDREM ELDFPQLFDG YSEY

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MVCLLSCNAF LKDEVVAGVE SRISAWTFLP VENGESMQIL HYENGQKYEP HWDYFHDKAN  60
QALGGHRIAT VLMYLSNVQK VKPKKGDALR FFSLHPNATT DVLSLHGSCP VIEGEKWSAT  120
KWIHVRNFDK PDDTSDECKD ENVNCSTWAA SGECIKNPVY MVGSAEGLAE EDAKILAYVA  180
SHGIGNWTLV PQKAGLNRCG KSCRLRWTNY LRPDLKHDSF TPDEEDLILR YHQAIGSRWS  240
LIAQQLPGRT DNDVKNHWNT KLKKKLSKMG IDPITHKPFG QLLSDYGNIN DIIPPNMRPS  300
DQRHQEPSEF SHADSSLTMM DPYQEPQTPM SLMPAHFQVI NEAASSSTSS PAASIVQVNL  360
PSSPSVWSDY LVGDQEQECT NESDLGILPT KVENLNNYSG VGVDHTKNSL DVATTSVSFV  420
ESILNRDREM ELDFPQLFDG YSEY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	8e-67	MYB family protein