PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc031470.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 259aa    MW: 30338.5 Da    PI: 8.2337
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc031470.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.62.8e-27959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krien++ rqvtfskRr+g+lKK +ELSvLCda++ +i+fss+gkl+ey +
  Cse_sc031470.1_g010.1  9 KRIENNTSRQVTFSKRRTGLLKKTHELSVLCDAQIGLIVFSSKGKLFEYTT 59
                           79***********************************************75 PP
2K-box68.13e-2375166595
                  K-box   5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                            +g++  e+++ e+++ el+++kke+ nLq ++ +++G+dL+s +l+eL++LeqqLe s++k+R++K +ll +q+++lq+ ek l++en
  Cse_sc031470.1_g010.1  75 TGSRiPENTNREQMHSELSRMKKETLNLQLSLQRYKGDDLSSAQLEELNHLEQQLEFSVQKVRARKFQLLQQQVDNLQRTEKVLEKEN 162
                            55555788999***************************************************************************** PP

                  K-box  92 kaLr 95 
                            +++ 
  Cse_sc031470.1_g010.1 163 EEMY 166
                            9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MGRGKIEVKR IENNTSRQVT FSKRRTGLLK KTHELSVLCD AQIGLIVFSS KGKLFEYTTH  60
PLSMPQIIDR YLKATGSRIP ENTNREQMHS ELSRMKKETL NLQLSLQRYK GDDLSSAQLE  120
ELNHLEQQLE FSVQKVRARK FQLLQQQVDN LQRTEKVLEK ENEEMYHWLM GKQQEEINQQ  180
QAMAMTELKL VGQEHQLFEQ FPFYGSEQPN SVLQLAADLP DLQLHSYPYR LQSTQANLQE  240
STSAPHNIFE FIIRWTCNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.23e-60MIKC_MADS family protein