PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc031829.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 1433aa MW: 159896 Da PI: 6.2091

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc031829.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.3	2e-06	1410	1433	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ f+++G Ck+G++C++ H+ Cse_sc031829.1_g020.1 1410 GQRVCK-FYESGRCKRGASCNYWHP 1433 6799.8899*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1433 aa Download sequence
MDLWCWHICS ICQKAAHHMC YTCTYSLCKG CIKKTDYVCV RGDKGFCTVC LKTIMLIENN 60 GQGKDEKAQV DFDDKTSWEY LFKVYWVYLK GKLSLTLDEL TQAKNPPKVP ETTLAASPST 120 CVHNVDNDLK SIKTDTPPQV LEASESKRRK KDEQMVIPHK ETVSTKKLAT KESSSVVVRK 180 DWATKELLDF VAHMRNGNTS VISQFDVQEL MLEYIKRNNL RDPKKKSQII CDSRLKILFG 240 KPRVGHFEML KLLEFHFFMQ EDLSKSKINS IAKQVDPDWN SDNIVTMSNK KRKNHKKVED 300 RAPQNKLDEY AAIDIHNINL VYLRRKVMEN LIGDSEEFNK KVVGAIVRIR ITSKDQKHDI 360 YRLVRVVGTS KADAPYKVGD KSADVMLEVL NLDKKETVSI DAISNQDLSE DECRRLRQSI 420 KCGLVQRFTV GEIQDKAVSL QYARLNDILE AETLRLNNLR DRASEKGHKK RYPLMIDYLL 480 IFVVLSCIHL LLDTCISYKS YRFGEYVEKL QLLKTPEERE RRMREIPDVH SDPKMNPDYE 540 TDDAEEHSNK EDEQTKTKFT SHKNTSTPKK RAEFSNNVSS RSWKIEKNKQ LTIKSEEDRV 600 TTRKDAHGIK NNSGRPQNQV ESNGSTTTNW NHRTSGSSSF PNTASETATT SSMRNTPISN 660 DSEIDKVWYY RDPSGKVQGP FCMVQLQKWS TTGYFPTDMR IWINREDESL LLNDVLKEQL 720 QKKTATEKVG IRIEGLSVRT TNLLSDSQSS SGRITSSFAK SIESTGQFKM QEMASPTPIE 780 NSADNKPVSS VFAGNASLND LPSPTPNKIT SEGEKVENTI KEQSLPSSET LVRESENSDV 840 GRAHLPILSS ETLVPEAANT AGWSNGSSQD VGGAQLPKLA SEDTVRESGN PSSCNNDSDV 900 GRAHLSKLSS ETLAPEAGNT AGWSNGSSQD VGGSQLPKIA EEWSGYSPTE VKQEERHPGL 960 SQDIGGAQLP KQSSEKLVQD FGNAASWNNG SKQDVGGAQV PKSSSETLVQ VAGNETSWNN 1020 NSRQDVGGAQ VPKSSSETLV QVAGNETSWN NNLRQDVGGA QLSKTADEWS GYSPTQVKKQ 1080 EWHPEDDHVA TTTANTEQTI SSPPPSSQPE YNNYMPSWQG VRETIEFSTL AEESVSDLLA 1140 EVDAMESQNG FPSPTSRRNN FAEDIFNGSF EEFSPTPVHG ARSNGFSSNG IDIQLPFKWP 1200 EIARENITKD IQVTAHSSEV QPPSQDMIDV NNSIKSVEGE SQTKVGNVQI EEESVPIRPG 1260 HDASETSQDR EGCLNEHKES EFTQSASTKS EDPISEKVRA DHSDVMAVDV TLQSAKVDAV 1320 GPPQQGTLNN FAQPAPEITT RADTHLNPSQ GLTFGWDPQQ RYNNNSLSQR GYNVEDSGYR 1380 NGKPWVRQSL FGSGSDVNGG VGYSRPPPKG QRVCKFYESG RCKRGASCNY WHP

Sequence ? help Back to Top

Protein Sequence Length: 1433 aa Download sequence

MDLWCWHICS ICQKAAHHMC YTCTYSLCKG CIKKTDYVCV RGDKGFCTVC LKTIMLIENN  60
GQGKDEKAQV DFDDKTSWEY LFKVYWVYLK GKLSLTLDEL TQAKNPPKVP ETTLAASPST  120
CVHNVDNDLK SIKTDTPPQV LEASESKRRK KDEQMVIPHK ETVSTKKLAT KESSSVVVRK  180
DWATKELLDF VAHMRNGNTS VISQFDVQEL MLEYIKRNNL RDPKKKSQII CDSRLKILFG  240
KPRVGHFEML KLLEFHFFMQ EDLSKSKINS IAKQVDPDWN SDNIVTMSNK KRKNHKKVED  300
RAPQNKLDEY AAIDIHNINL VYLRRKVMEN LIGDSEEFNK KVVGAIVRIR ITSKDQKHDI  360
YRLVRVVGTS KADAPYKVGD KSADVMLEVL NLDKKETVSI DAISNQDLSE DECRRLRQSI  420
KCGLVQRFTV GEIQDKAVSL QYARLNDILE AETLRLNNLR DRASEKGHKK RYPLMIDYLL  480
IFVVLSCIHL LLDTCISYKS YRFGEYVEKL QLLKTPEERE RRMREIPDVH SDPKMNPDYE  540
TDDAEEHSNK EDEQTKTKFT SHKNTSTPKK RAEFSNNVSS RSWKIEKNKQ LTIKSEEDRV  600
TTRKDAHGIK NNSGRPQNQV ESNGSTTTNW NHRTSGSSSF PNTASETATT SSMRNTPISN  660
DSEIDKVWYY RDPSGKVQGP FCMVQLQKWS TTGYFPTDMR IWINREDESL LLNDVLKEQL  720
QKKTATEKVG IRIEGLSVRT TNLLSDSQSS SGRITSSFAK SIESTGQFKM QEMASPTPIE  780
NSADNKPVSS VFAGNASLND LPSPTPNKIT SEGEKVENTI KEQSLPSSET LVRESENSDV  840
GRAHLPILSS ETLVPEAANT AGWSNGSSQD VGGAQLPKLA SEDTVRESGN PSSCNNDSDV  900
GRAHLSKLSS ETLAPEAGNT AGWSNGSSQD VGGSQLPKIA EEWSGYSPTE VKQEERHPGL  960
SQDIGGAQLP KQSSEKLVQD FGNAASWNNG SKQDVGGAQV PKSSSETLVQ VAGNETSWNN  1020
NSRQDVGGAQ VPKSSSETLV QVAGNETSWN NNLRQDVGGA QLSKTADEWS GYSPTQVKKQ  1080
EWHPEDDHVA TTTANTEQTI SSPPPSSQPE YNNYMPSWQG VRETIEFSTL AEESVSDLLA  1140
EVDAMESQNG FPSPTSRRNN FAEDIFNGSF EEFSPTPVHG ARSNGFSSNG IDIQLPFKWP  1200
EIARENITKD IQVTAHSSEV QPPSQDMIDV NNSIKSVEGE SQTKVGNVQI EEESVPIRPG  1260
HDASETSQDR EGCLNEHKES EFTQSASTKS EDPISEKVRA DHSDVMAVDV TLQSAKVDAV  1320
GPPQQGTLNN FAQPAPEITT RADTHLNPSQ GLTFGWDPQQ RYNNNSLSQR GYNVEDSGYR  1380
NGKPWVRQSL FGSGSDVNGG VGYSRPPPKG QRVCKFYESG RCKRGASCNY WHP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	171	KRRKKDEQMVIPHKETVSTKKLATK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	1e-175	C3H family protein