PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc031934.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 899aa MW: 100132 Da PI: 5.6082

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc031934.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	39.5	1.1e-12	479	526	3	50
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 +++++e ++k+F p+ +A+k+L v+ ++LKr R ++I RWP k++ Cse_sc031934.1_g010.1 479 DSLTMEAVEKMFGQPMDEACKSLRVSRSTLKRFLRDHNITRWPMSKLN 526 689****************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 899 aa Download sequence
MNKEMILDAL NSRYCCLNEP LHQANDPRFL TSLRVYGTRE DDEPQSLQTL SQHTIDPQIL 60 KKKITAALSA LIFRELHVLV QFWLPDTIRK RCMLTNLDQP FGIGVINEAL YNYRLESEQR 120 MLPVDREHIE ELGPPGRVYR QKLPEWSLDI QGLPTSQNIK YSTACIHGYL SLPVLDPASG 180 CCVGVLELIT LSKHVDYAFE EQDLKTSNAF EEPSFCQLPS EDWKIQVAKI YDILKVMCDT 240 HNLPLAQTWE LSPLGSHVSH QKSLQKSCSS FNRGCIGKVC VSTAGLPFYV RDLSMWEFHK 300 ACMEQHLGKS RGVVGRALLS RCSSYCENVT KLSEEEYPLV HNACKSGLGG CFAIFLHGVE 360 GKNDYVLEFF IPLDIKDSID SYVLNLVQKL KLKIEDASGF EMGDISSMEV IRPPSVVNNI 420 SSMTEVDTPN GIIPHPFVTS VATIASGAYA NVMQKTRDKG NDAGEPSNRL IRHIKRKRDS 480 LTMEAVEKMF GQPMDEACKS LRVSRSTLKR FLRDHNITRW PMSKLNDRNA YSNQHLPVSK 540 VARISACVPY LDDPQLRPIV TMEAVEKQVG QPLDEAIKSF GGALVPYLDD PRLLSIGTME 600 AVENQVGQPM DEVIKGLGGK SAYLSKTISA LSEQVGPLMD EAIKSLGVRS ACVTDSKQHF 660 LEQVSKRSVG VFLFLRKRDL ASIIPPRSDC VHVMDLEVFK SIKLSVKESF SVWIHSSGEF 720 SFSTAVDSLV FENTTNTEQA TNNVDPLMAR TAMAHQNDPV VFNSTTNTEQ ATNNVDPLMA 780 RNVMAHQHDP FLFDSTTCME QATNNVDPLM NFVDAIPRLI RVDFIDDQGS FSKMAGCSSG 840 SVVDHLMEPG GNENAMTEIG RGLEGALPSP IGSGDMYSFG ANPSDYDSPN LIFDDQLLY

Sequence ? help Back to Top

Protein Sequence Length: 899 aa Download sequence

MNKEMILDAL NSRYCCLNEP LHQANDPRFL TSLRVYGTRE DDEPQSLQTL SQHTIDPQIL  60
KKKITAALSA LIFRELHVLV QFWLPDTIRK RCMLTNLDQP FGIGVINEAL YNYRLESEQR  120
MLPVDREHIE ELGPPGRVYR QKLPEWSLDI QGLPTSQNIK YSTACIHGYL SLPVLDPASG  180
CCVGVLELIT LSKHVDYAFE EQDLKTSNAF EEPSFCQLPS EDWKIQVAKI YDILKVMCDT  240
HNLPLAQTWE LSPLGSHVSH QKSLQKSCSS FNRGCIGKVC VSTAGLPFYV RDLSMWEFHK  300
ACMEQHLGKS RGVVGRALLS RCSSYCENVT KLSEEEYPLV HNACKSGLGG CFAIFLHGVE  360
GKNDYVLEFF IPLDIKDSID SYVLNLVQKL KLKIEDASGF EMGDISSMEV IRPPSVVNNI  420
SSMTEVDTPN GIIPHPFVTS VATIASGAYA NVMQKTRDKG NDAGEPSNRL IRHIKRKRDS  480
LTMEAVEKMF GQPMDEACKS LRVSRSTLKR FLRDHNITRW PMSKLNDRNA YSNQHLPVSK  540
VARISACVPY LDDPQLRPIV TMEAVEKQVG QPLDEAIKSF GGALVPYLDD PRLLSIGTME  600
AVENQVGQPM DEVIKGLGGK SAYLSKTISA LSEQVGPLMD EAIKSLGVRS ACVTDSKQHF  660
LEQVSKRSVG VFLFLRKRDL ASIIPPRSDC VHVMDLEVFK SIKLSVKESF SVWIHSSGEF  720
SFSTAVDSLV FENTTNTEQA TNNVDPLMAR TAMAHQNDPV VFNSTTNTEQ ATNNVDPLMA  780
RNVMAHQHDP FLFDSTTCME QATNNVDPLM NFVDAIPRLI RVDFIDDQGS FSKMAGCSSG  840
SVVDHLMEPG GNENAMTEIG RGLEGALPSP IGSGDMYSFG ANPSDYDSPN LIFDDQLLY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	2e-76	Nin-like family protein