PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc032862.1_g010.2
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28851.5 Da    PI: 7.6811
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc032862.1_g010.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.61.2e-31959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss
  Cse_sc032862.1_g010.2  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFSS 59
                           79***********************************************96 PP
2K-box69.79.6e-24851769100
                  K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                            +e+ +++s++qe+ +Lk++++ L++  R++ Ge++++Ls +eL++Le+qL+ slk+iR+ +++ l++ + e+qk+e+ l e nk+Lr 
  Cse_sc032862.1_g010.2  85 KEDLQEQSSYQEYMRLKERYDALKQLERNYYGEEIDNLSTNELESLERQLHCSLKQIRTIRTQSLVDRLYEQQKMEHHLYESNKTLRL 172
                            5778899********************************************************************************* PP

                  K-box  97 klee 100
                            k+ee
  Cse_sc032862.1_g010.2 173 KFEE 176
                            *986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MGKGRLELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFST RGKLYEFSST  60
SSMLKTLERY EKSSFGPPEQ RRPAKEDLQE QSSYQEYMRL KERYDALKQL ERNYYGEEID  120
NLSTNELESL ERQLHCSLKQ IRTIRTQSLV DRLYEQQKME HHLYESNKTL RLKFEEESQA  180
EALQWEAHAR ANGMVYGHPQ HQLSQTTHDA FYHPTGCETT LQIGYQTDMS AVTSTSMNHQ  240
MQGWPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.19e-91MIKC_MADS family protein