PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc033361.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 267aa    MW: 30759.7 Da    PI: 8.1844
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc033361.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.8e-314190150
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                           krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Cse_sc033361.1_g010.1 41 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 90
                           79***********************************************8 PP
2K-box106.23.9e-351112096100
                  K-box   6 gksleeakaeslqqelakLkkeienLq....reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                            + s++ea+a+++qqe+ kL+++i nLq    +  R+++Ge+L+++ +k+L++Le++Lek++++iRskKnell+++ie++qk+e el++
  Cse_sc033361.1_g010.1 111 SGSVSEANAQYYQQESGKLRSQIANLQnqnrQFYRNIMGESLTDMPMKDLKNLETKLEKAITRIRSKKNELLFAEIEYMQKRELELHN 198
                            44589**********************5433334789*************************************************** PP

                  K-box  90 enkaLrkklee 100
                            +n+ Lr+k++e
  Cse_sc033361.1_g010.1 199 NNQFLRAKIAE 209
                            ********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MANSDAFELD FSCVDRSMSF PDDSADMSPQ RKLGKGKIEI KRIENTTNRQ VTFCKRRNGL  60
LKKAYELSVL CDAEVALIVF SSRGRLYEYA NNSVRGTIDR YKKACLDPPS SGSVSEANAQ  120
YYQQESGKLR SQIANLQNQN RQFYRNIMGE SLTDMPMKDL KNLETKLEKA ITRIRSKKNE  180
LLFAEIEYMQ KRELELHNNN QFLRAKIAEN ERSAQHQHMS LMPGSSDYEL VTPHQPFDGR  240
NYLQSNEMQP SNDYSCQDQT PLQLVIT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-117MIKC_MADS family protein