PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc033497.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

LSD

Protein Properties

Length: 169aa MW: 17912.8 Da PI: 8.168

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc033497.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	41.1	2.9e-13	2	26	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YP+GA++V+CalC+tV Cse_sc033497.1_g010.1 2 CSGCRSTLLYPTGASNVCCALCNTV 26 ************************9 PP
2	zf-LSD1	43.8	4.2e-14	41	65	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+ GA+sVRC++C+tV Cse_sc033497.1_g010.1 41 CGGCRTLLMYTCGATSVRCSCCHTV 65 ************************9 PP
3	zf-LSD1	45.2	1.6e-14	79	102	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C +Crt+L+YP+GApsV+Ca+C+ Cse_sc033497.1_g010.1 79 CAHCRTMLMYPYGAPSVKCAVCQY 102 **********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence
MCSGCRSTLL YPTGASNVCC ALCNTVTSVP PPGMEMSRLI CGGCRTLLMY TCGATSVRCS 60 CCHTVNLAPV QNQLAQVNCA HCRTMLMYPY GAPSVKCAVC QYITNVNTSN GLNHGRIPIP 120 VQPNTSLPSS STEKPHSHTQ TVVVENPMSV DESGKLVSNV VVGVTTEKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	2e-64	LSD family protein