PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc033799.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 578aa MW: 63997.1 Da PI: 7.6732

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc033799.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.8	6e-06	258	278	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C Gd C +aHg Cse_sc033799.1_g010.1 258 PCPEFRK-GSCVKGDLCEYAHG 278 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence
MCKVTKSRLN SIMVEDKGQE KYHGIFSKCS KLLELAANDD VEGFACMVEE KGFSIDDISL 60 WYGKRNGGKG KMGFEERTPL MIASLYGSSQ VLKYIVNSKK VDVNKSSDSD GAAALHCAAA 120 GGSHNGVMIV KLLLEASADV NLADIYGNKP VDLIARGLKS SKRRILEILL NGFVSDGTDV 180 EEVEEKEIVS AKKEYPVDVS MPDINNGVYG SDEFRMYTFK VKPCSRAYTH DWTECPFVHP 240 GENARRRDLK KFNYSCVPCP EFRKGSCVKG DLCEYAHGVF ESWLHPAQYK TRLCKDEIGC 300 ARKVCFFAHT RDEMRPVYAS TGSALPSPKS TSLPVTSVEM GSMSPLSLGA MSPPTSPMWQ 360 SNHLTPPALQ LPGSRLKSSL NARDIEMDIE QQRRQLVNDL TNNLYNNNNN RFGELKPTNL 420 DDMFGSHDQS LFLRNSNQNQ LRASYPSPNY SSSPVRNSYA FDSSAAVAQA VMNSRSGSFA 480 KQRSQSFIDR GAGLTMSPRS IPQQSSNLSE WGSPNGKLDW GFSSEDANKL RKSASFGYHG 540 NAAAVHSSPI MHTYGDTSAD KLPHWIEQMY IEQEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence

MCKVTKSRLN SIMVEDKGQE KYHGIFSKCS KLLELAANDD VEGFACMVEE KGFSIDDISL  60
WYGKRNGGKG KMGFEERTPL MIASLYGSSQ VLKYIVNSKK VDVNKSSDSD GAAALHCAAA  120
GGSHNGVMIV KLLLEASADV NLADIYGNKP VDLIARGLKS SKRRILEILL NGFVSDGTDV  180
EEVEEKEIVS AKKEYPVDVS MPDINNGVYG SDEFRMYTFK VKPCSRAYTH DWTECPFVHP  240
GENARRRDLK KFNYSCVPCP EFRKGSCVKG DLCEYAHGVF ESWLHPAQYK TRLCKDEIGC  300
ARKVCFFAHT RDEMRPVYAS TGSALPSPKS TSLPVTSVEM GSMSPLSLGA MSPPTSPMWQ  360
SNHLTPPALQ LPGSRLKSSL NARDIEMDIE QQRRQLVNDL TNNLYNNNNN RFGELKPTNL  420
DDMFGSHDQS LFLRNSNQNQ LRASYPSPNY SSSPVRNSYA FDSSAAVAQA VMNSRSGSFA  480
KQRSQSFIDR GAGLTMSPRS IPQQSSNLSE WGSPNGKLDW GFSSEDANKL RKSASFGYHG  540
NAAAVHSSPI MHTYGDTSAD KLPHWIEQMY IEQEQMVA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	164	LKSSKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	1e-165	C3H family protein