PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc034009.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family C3H
Protein Properties Length: 369aa    MW: 40858.5 Da    PI: 6.1848
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc034009.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.5e-07129149526
                            --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                             C+ f++ G Ck Gd+C +aHg
  Cse_sc034009.1_g010.1 129 ACPEFRK-GGCKKGDSCEYAHG 149
                            7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    
MAGDTNNHHG MMVHVPPWTT LMDDPLTGLS PFSPHSPNAA TTLEDYAYFL RNDAALRRYL  60
EEDLDSENGC TDFDITSETY ACDSFRMYEF KVRKCQRARS HDWTDCPYAH PGEKARRRDP  120
RKYNYSGTAC PEFRKGGCKK GDSCEYAHGV FECWLHPSRY RTQPCKDGVG CRRRVCFFAH  180
TPEQLRVLSP GNDNGPGSGR SFSSFFSSPS ETSGATDQEI FDSPPMSPMM DGCLSRSVGS  240
VSVNEMVSSL RRLQLNKTPT MSTSWSMQMS RVGAGLVSSP RAGSGSGFYS LPSTPTRPVT  300
IPGLGFSEIW EEGGVEEEPV MERVESGRVL RAKMFEKLSK ENHVDTADPN SGDGSGSNPD  360
VGWISELVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-95C3H family protein