PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc034209.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 750aa MW: 84564.5 Da PI: 6.8316

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc034209.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	46.2	9e-15	602	645	3	46
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46 +++++e + ++F++pi++AA + gv+ ++LKr CR++GI WP Cse_sc034209.1_g010.1 602 DSLTMEAVVQHFEKPINQAAESFGVSRSTLKRFCRENGILSWPK 645 689****************************************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence
MYQPHIQIKM KNKMNTFQPQ FTFICANQTK TTTTTTYPIP QDKLTAKLLT AQAATVYIYF 60 ESCPVSMALF GQSHSVDSAY REKSSCSSPR SVLSTDQNKD LPWNKVSLEP PTVSSSGESR 120 YLTPLWVSRN EEPQNELYES IRAVLKQVVL RAQHVLVQFW SPRVVGKHQL LTTLDQPFGL 180 GLPIEELYFY RKESERNLFL VCMDDEERDI SPPARVFRRG LPEWTSDLAN YLPKHFPQQD 240 CAIRCNLHGY LALPIFDSTT ALCIGVLELL MSSKNTDYSF EVQQVHKALK LPNLTCPQTF 300 DCATPQVLSE RRQNVWDKIC CILKSVSDIH DLPLAQTWAV SPPNSFVAHE KTLQKSCNSF 360 DTKCIGKVCM STTSLPFYVR DMGMWPFREA CKMQHLDKSC SFVGKALLAH GSSYCEDITQ 420 LCEEEYPLVH NARMSGLTGC FTIFLHSIEG DNGDYVLEFF LPFNSKDSRH VLNLVQTLKQ 480 MIVVASGFEL GEISPIKITG SPRDESCLSL TTMAKTLAFG MDSTDSESVL ANVVKTDSAD 540 DQSQCSSKEN YTNDMSDNVN IVNSRENDNV ASYSIVTNQN PSDTITDAGE KSKKRGRKRK 600 IDSLTMEAVV QHFEKPINQA AESFGVSRST LKRFCRENGI LSWPKPCQSK KTSHATKSKS 660 DSIYEVAQLM VKAIFKGDMI KFRFPISSGL LELENEVAKR LDLKGKTLII KYKDEENDLL 720 RITCDDDLHN LPEFLASNTT IKLLVELASN

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence

MYQPHIQIKM KNKMNTFQPQ FTFICANQTK TTTTTTYPIP QDKLTAKLLT AQAATVYIYF  60
ESCPVSMALF GQSHSVDSAY REKSSCSSPR SVLSTDQNKD LPWNKVSLEP PTVSSSGESR  120
YLTPLWVSRN EEPQNELYES IRAVLKQVVL RAQHVLVQFW SPRVVGKHQL LTTLDQPFGL  180
GLPIEELYFY RKESERNLFL VCMDDEERDI SPPARVFRRG LPEWTSDLAN YLPKHFPQQD  240
CAIRCNLHGY LALPIFDSTT ALCIGVLELL MSSKNTDYSF EVQQVHKALK LPNLTCPQTF  300
DCATPQVLSE RRQNVWDKIC CILKSVSDIH DLPLAQTWAV SPPNSFVAHE KTLQKSCNSF  360
DTKCIGKVCM STTSLPFYVR DMGMWPFREA CKMQHLDKSC SFVGKALLAH GSSYCEDITQ  420
LCEEEYPLVH NARMSGLTGC FTIFLHSIEG DNGDYVLEFF LPFNSKDSRH VLNLVQTLKQ  480
MIVVASGFEL GEISPIKITG SPRDESCLSL TTMAKTLAFG MDSTDSESVL ANVVKTDSAD  540
DQSQCSSKEN YTNDMSDNVN IVNSRENDNV ASYSIVTNQN PSDTITDAGE KSKKRGRKRK  600
IDSLTMEAVV QHFEKPINQA AESFGVSRST LKRFCRENGI LSWPKPCQSK KTSHATKSKS  660
DSIYEVAQLM VKAIFKGDMI KFRFPISSGL LELENEVAKR LDLKGKTLII KYKDEENDLL  720
RITCDDDLHN LPEFLASNTT IKLLVELASN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	1e-82	Nin-like family protein