PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc034317.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

SBP

Protein Properties

Length: 197aa MW: 22287.8 Da PI: 7.5709

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc034317.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126	1.5e-39	20	96	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC dls++++yh++hk+Ce+hsk+p+vl++g++ rfCqqCsrfh+l+efDeekrsCr+rL++hn+rrrk+q+ Cse_sc034317.1_g020.1 20 CLVDGCMDDLSNCRKYHQKHKICEAHSKSPQVLINGQTLRFCQQCSRFHSLEEFDEEKRSCRKRLDGHNRRRRKPQP 96 **************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence
MASSKRAYTK ATDANEVVNC LVDGCMDDLS NCRKYHQKHK ICEAHSKSPQ VLINGQTLRF 60 CQQCSRFHSL EEFDEEKRSC RKRLDGHNRR RRKPQPCLFS PETNMLQFGG QPAHPTIGFM 120 NPRFNQSPGR MDHSDYSHFL LSSSSGSSGT TLSHVAHPPS VSFPTTSIHL DPGLRFGSLE 180 YDFDADWNGV TDMEPHD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	94	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-43	SBP family protein