PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc035017.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family HD-ZIP
Protein Properties Length: 325aa    MW: 35701.2 Da    PI: 8.606
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc035017.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.71.3e-15143202256
                            T--SS--HHHHHHHHHHHHHSSS--.....HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   2 rkRttftkeqleeLeelFeknryps.....aeereeLAkklgLterqVkvWFqNrRakek 56 
                            rk+ +++k+q  +Lee F+++++++     a+++  LAk+l+L  rqV vWFqNrRa+ k
  Cse_sc035017.1_g010.1 143 RKKLRLSKDQAAVLEETFKEHNTLNpvsgiAKQKLALAKQLDLRPRQVEVWFQNRRARTK 202
                            788899**************9999855555689999**********************98 PP
2HD-ZIP_I/II119.71.6e-38143237191
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLep.....erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                            +kk+rlsk+q+++LEe+F+e+++L+p     ++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+ke
  Cse_sc035017.1_g010.1 143 RKKLRLSKDQAAVLEETFKEHNTLNPvsgiaKQKLALAKQLDLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDTLTEENRRLQKE 230
                            69***********************87777689******************************************************* PP

            HD-ZIP_I/II  84 veeLreel 91 
                            v+eLr +l
  Cse_sc035017.1_g010.1 231 VNELR-AL 237
                            ****9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MSKDDELGLG LTLSLSCPKG YQQHPPPPPP PQPSQTPSQP PVARFPLNLM PRHHKLSFVI  60
NHHATDLNMA RGIDVNRAPS VSAVMALTAE REDDALVSSP NSTVSSVSGK RIEREENEAE  120
RESSSHGDGG DDDDDGGDAA AARKKLRLSK DQAAVLEETF KEHNTLNPVS GIAKQKLALA  180
KQLDLRPRQV EVWFQNRRAR TKLKQTEVDC EYLKRCCDTL TEENRRLQKE VNELRALKLS  240
PQFYMNMNPP TTLTMCPQCE RVAVSSSSSS SAAAATSSVV GSSGLPKGLQ GSMTANAQKQ  300
TRPFLPRASI IPHRPIDGHQ VHPRW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197205RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.16e-59HD-ZIP family protein