PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc036635.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family HD-ZIP
Protein Properties Length: 211aa    MW: 24671.4 Da    PI: 4.7214
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc036635.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.3e-193081556
                           SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           ++ft++q++ Le+ F++++++  +++ +LAk lgL+ rqV +WFqN+Ra++k
  Cse_sc036635.1_g030.1 30 RRFTNQQIKSLETIFQSESKLEPRKKLQLAKDLGLQPRQVAIWFQNKRARWK 81
                           69*************************************************9 PP
2HD-ZIP_I/II119.61.6e-3829119393
            HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                            +rr++++q+k+LE+ F++e+kLep++K +la++Lglqprqva+WFqn+RAR+k+kqlE+dy+ L+++yd+l ++ + L++e+++L+ +
  Cse_sc036635.1_g030.1  29 QRRFTNQQIKSLETIFQSESKLEPRKKLQLAKDLGLQPRQVAIWFQNKRARWKSKQLERDYNILRANYDSLLSKFDVLSRENQSLTLQ 116
                            79************************************************************************************99 PP

            HD-ZIP_I/II  91 lke 93 
                            l++
  Cse_sc036635.1_g030.1 117 LQK 119
                            986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MLDLGSDPDS DCFTTFFNTL SNNKDNKIQR RFTNQQIKSL ETIFQSESKL EPRKKLQLAK  60
DLGLQPRQVA IWFQNKRARW KSKQLERDYN ILRANYDSLL SKFDVLSREN QSLTLQLQKL  120
HEVIDKKEKN CSTRENSKDS TEEKISEKGL GNVSDADSNM KQEYPEHNNS MLVVDMLETA  180
NEDNWEDLES DQLLNEAAIG DTSNQWWDVW C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-46HD-ZIP family protein