PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc037889.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Trihelix

Protein Properties

Length: 346aa MW: 38815.8 Da PI: 4.6405

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc037889.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	74	2.6e-23	46	137	1	83
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 rWt+qe+l+Lie+++ eer rrg+ +p+W++vs+++++r ++r+p+qC+++w+n+ +++kkik++e++ ++e s + Cse_sc037889.1_g010.1 46 RWTRQETLTLIEGKKVAEERGRRGRksssvlgldHVEPKWDSVSSYCKQRSVNRGPVQCRKRWSNMVGDFKKIKAWESQVNQECDSYW 133 8*******************98667788887799****************************************9877766677 PP trihelix 80 pyfd 83 + Cse_sc037889.1_g010.1 134 LIRS 137 6555 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MASQTEEMSD NGGVTTPLKA VVDEQQPQPM TVEVVDDKNK SPRHPRWTRQ ETLTLIEGKK 60 VAEERGRRGR KSSSVLGLDH VEPKWDSVSS YCKQRSVNRG PVQCRKRWSN MVGDFKKIKA 120 WESQVNQECD SYWLIRSDLR KENKLPGFFD KEVFDVLDGK AVTKAAYKLA LVTVSANAYG 180 ENVAGEEDEE EEGNGEGEAD VVFDSGRRAT SDDGLFPDSD NMEEEEEEGE GNGDGHDDPP 240 EKIHDAVPIS GTFKGQQTNS VSWREGCTSQ AGFKRRKVST DKCQDKNFDD RLIEVLEKNT 300 SMLNARLEAE NTNCQLDREQ RKDYNDSLVS ALNKISDALA KIADKI

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MASQTEEMSD NGGVTTPLKA VVDEQQPQPM TVEVVDDKNK SPRHPRWTRQ ETLTLIEGKK  60
VAEERGRRGR KSSSVLGLDH VEPKWDSVSS YCKQRSVNRG PVQCRKRWSN MVGDFKKIKA  120
WESQVNQECD SYWLIRSDLR KENKLPGFFD KEVFDVLDGK AVTKAAYKLA LVTVSANAYG  180
ENVAGEEDEE EEGNGEGEAD VVFDSGRRAT SDDGLFPDSD NMEEEEEEGE GNGDGHDDPP  240
EKIHDAVPIS GTFKGQQTNS VSWREGCTSQ AGFKRRKVST DKCQDKNFDD RLIEVLEKNT  300
SMLNARLEAE NTNCQLDREQ RKDYNDSLVS ALNKISDALA KIADKI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-77	Trihelix family protein