PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc038087.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 319aa MW: 36407.8 Da PI: 6.3677

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc038087.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.9	8.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ ++ +G g+W+ ++++ g+ R++k+c++rw +yl Cse_sc038087.1_g010.1 14 RGLWSPEEDEKLIRFITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	55	1.9e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eE++l+++++ G++ W+ Ia++++ gRt++++k++w+++ Cse_sc038087.1_g010.1 67 RGKFTPEEEKLIINLHSVVGNK-WAHIASHLP-GRTDNEIKNYWNSW 111 89******************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence
MGQHSCCNQQ KVKRGLWSPE EDEKLIRFIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY 60 LRPDIRRGKF TPEEEKLIIN LHSVVGNKWA HIASHLPGRT DNEIKNYWNS WIKKKINRKP 120 ASTSIATRLS TTSTSLDQTH TDYGYNSTHL SFLNHDLGIN NIKQTIQEPV FSSSSTSLFM 180 LDTSGSILEG QNGNCVAQTQ YFNDSMWQTN KIQIPELSSQ VLNFATNGMY SGYLPPLMEN 240 MESMVEEQNC HLNNVEGREC LIQKQHEVNE WVVDQTSHQC PSYLFWDDEN QEVQLGGEEI 300 VVPSSSNMGH ILSSYPTSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63910.1	8e-96	MYB family protein