PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc039329.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 247aa MW: 27893.2 Da PI: 5.6804

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc039329.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.7e-09	139	186	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + + k + + +L +v+YI+sLq Cse_sc039329.1_g010.1 139 SHSLAERLRREKINGKLRCLQELVPGC---Y-KTMGMSVMLDVTVNYIRSLQ 186 8***********************9...4.4477789**********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MDDHFTLEIS SNMELLENNI NNSLGNFQPN VSLPFMPLLD DTNNNNQSFN ISGDHQTRSF 60 YNPMTRLPTT TDDIDKTILG ESLGNSNLPS FSSGVTGQNK ANRNYSYGGR KRKKNHEAEV 120 EKPREVVHVR ARRGEATDSH SLAERLRREK INGKLRCLQE LVPGCYKTMG MSVMLDVTVN 180 YIRSLQNQIE FLSMKLSAAS MYYDFNSPEM DALDTIKGAN GYEAQVMDRM GAEGYGDLLQ 240 FQSSWPL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	114	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	9e-54	bHLH family protein