PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc040228.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 439aa MW: 48611.3 Da PI: 9.611

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc040228.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.7	7.3e-07	359	384	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+ +tG+Ck+G + kF+H++ Cse_sc040228.1_g020.1 359 GEKECSFYVKTGQCKFGVTYKFHHPQ 384 6789********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MMSDKLEVPR LKAKRDWYVG LLPDPVDHFH PDVHDEQLIK EAVMHSVPRR MINHGDTKSA 60 RAIMLVELKK LIEANPLFRD KLQFPNLKNS RLRTLINQRP NPDIKTLFVD HSCQKPNGAR 120 APSPAYTPLL GSLPKARGFP PLGAHGPFQP TPAPVATPLA VWMSNPPTVS HPTISGSVVG 180 LGIPSILAAL KHPRTPKNPS LDYPSVETDH ISKRTRPMGI TDEGSSLMSM DFHPIQQTLL 240 LVGTNVGDIG LWEVGSREKL VLKNFKVMNL SACSMPLQAA LVKDPGVFVN RVIWSPDGSL 300 FGFAYSRHLV QIYPYHGGED VRQNVEIEAH VGGVNYLAFS HPNKQLCVIT CGDDKTIKGE 360 KECSFYVKTG QCKFGVTYKF HHPQPTAIMQ APLQPQAPPQ ESVSSIPSAL YQSMQPPVPR 420 NWPVARPSTL SKCLYYHLA

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MMSDKLEVPR LKAKRDWYVG LLPDPVDHFH PDVHDEQLIK EAVMHSVPRR MINHGDTKSA  60
RAIMLVELKK LIEANPLFRD KLQFPNLKNS RLRTLINQRP NPDIKTLFVD HSCQKPNGAR  120
APSPAYTPLL GSLPKARGFP PLGAHGPFQP TPAPVATPLA VWMSNPPTVS HPTISGSVVG  180
LGIPSILAAL KHPRTPKNPS LDYPSVETDH ISKRTRPMGI TDEGSSLMSM DFHPIQQTLL  240
LVGTNVGDIG LWEVGSREKL VLKNFKVMNL SACSMPLQAA LVKDPGVFVN RVIWSPDGSL  300
FGFAYSRHLV QIYPYHGGED VRQNVEIEAH VGGVNYLAFS HPNKQLCVIT CGDDKTIKGE  360
KECSFYVKTG QCKFGVTYKF HHPQPTAIMQ APLQPQAPPQ ESVSSIPSAL YQSMQPPVPR  420
NWPVARPSTL SKCLYYHLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	9e-10	C3H family protein