PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc041237.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

NF-YC

Protein Properties

Length: 222aa MW: 24979.7 Da PI: 6.9466

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc041237.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	167.6	1.6e-52	53	146	8	101
NF-YC 8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ++ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trt ifdflvdi Cse_sc041237.1_g020.1 53 EEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTYIFDFLVDI 140 579*********************************************************************************** PP NF-YC 96 vprdel 101 vpr++l Cse_sc041237.1_g020.1 141 VPRKDL 146 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence
MPNAPLICTH LEMRNSNLMG YGGADKARML QRQLSVTSMK IGVGANRAAT AYEEIEQTTD 60 FKNHSLPLAR IKKIMKADED VRMISAEAPV IFARACEMFI LELTLRSWNH TEENKRRTLQ 120 KNDIAAAITR TYIFDFLVDI VPRKDLKDEI IASTVPRGGP LPVGAPTEGL PYYYMPPTQI 180 GASGMYMGNP VDPQALYGQQ PRPYMAQPMW PQQHQQEPQE DA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	122	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54830.3	2e-77	NF-YC family protein