PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc041994.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

AP2

Protein Properties

Length: 410aa MW: 46109.4 Da PI: 9.7487

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc041994.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.5	1.5e-17	77	126	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ +++g Cse_sc041994.1_g010.1 77 SQYRGVTFYRRTGRWESHIWD------SgKQVYLGGFDTAHAAARAYDQAAIRFRG 126 78*****************......44**********************998 PP
2	AP2	37.9	4.5e-12	169	219	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k g W+A+ g +k+++lg f ++ eAa+a+++a+ k +g Cse_sc041994.1_g010.1 169 SKYRGVTLHK-CGLWEARMGQlH---G-KKYIYLGLFESELEAARAYDKAAIKCNG 219 89******.7**44433...4.6******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MILDLTLNLN SNDNVKPNTR KNDDRSLESV MTTKQFFPLD NGLRNDTLHD MHGVHEGEFV 60 LKQKMKKGRR GPRSRSSQYR GVTFYRRTGR WESHIWDSGK QVYLGGFDTA HAAARAYDQA 120 AIRFRGPDAD INFNVNDYHE GLKQLKNLTK EEFVHVIRRQ STGLSRGSSK YRGVTLHKCG 180 LWEARMGQLH GKKYIYLGLF ESELEAARAY DKAAIKCNGR EAITNFEASS YEGATTPSTK 240 SGGTILQTNS FMLVFSNNIE YMDLNLGIAP PSFLNDTSRS MHQINHILSD TYEAGRTRID 300 PTTSMALRTQ IPFVRPSDQG SATSCYFPAY QETKLQKSKE VNSSLNWARQ VHDPYSGANP 360 ASSFSAAASS GFGNSMISYS SSGAAHHQPY YRTSALAHQH YNPPMYYSRS

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MILDLTLNLN SNDNVKPNTR KNDDRSLESV MTTKQFFPLD NGLRNDTLHD MHGVHEGEFV  60
LKQKMKKGRR GPRSRSSQYR GVTFYRRTGR WESHIWDSGK QVYLGGFDTA HAAARAYDQA  120
AIRFRGPDAD INFNVNDYHE GLKQLKNLTK EEFVHVIRRQ STGLSRGSSK YRGVTLHKCG  180
LWEARMGQLH GKKYIYLGLF ESELEAARAY DKAAIKCNGR EAITNFEASS YEGATTPSTK  240
SGGTILQTNS FMLVFSNNIE YMDLNLGIAP PSFLNDTSRS MHQINHILSD TYEAGRTRID  300
PTTSMALRTQ IPFVRPSDQG SATSCYFPAY QETKLQKSKE VNSSLNWARQ VHDPYSGANP  360
ASSFSAAASS GFGNSMISYS SSGAAHHQPY YRTSALAHQH YNPPMYYSRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	3e-82	AP2 family protein