PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc042182.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 262aa    MW: 30028.6 Da    PI: 7.5819
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc042182.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-141562148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g W+++Ed++l+ +v  +G g+W++++   g+ R +k+c++rw +yl
  Cse_sc042182.1_g010.1 15 KGLWSPDEDQKLKYYVMNYGHGCWSSVPINAGLQRNGKSCRLRWINYL 62
                           678*******************************************97 PP
2Myb_DNA-binding47.83.2e-1568113148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg ++ +Ede +  ++++lG++ W+  a++++ gRt++++k++w+++l
  Cse_sc042182.1_g010.1  68 RGEFSLQEDETISSLHRLLGNR-WSQMAQHLP-GRTDNEIKNYWNSHL 113
                            899*******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MRCKASEKPC PKHKKGLWSP DEDQKLKYYV MNYGHGCWSS VPINAGLQRN GKSCRLRWIN  60
YLRPGLKRGE FSLQEDETIS SLHRLLGNRW SQMAQHLPGR TDNEIKNYWN SHLKKRIEKL  120
QHLQTNPKTD YISTNMRSTE PSSSCPNAAS FMNSSSSDMN QLVPPASQIA TLPKILFADW  180
ISLDEFQKDL GKSSDQPFSP GSNYVVSHIH DYHEVSTQEN KDSQNCLISR SNNGDMFQSH  240
MTIDEISSFS DGDFNLDDFI YI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.14e-59MYB family protein