PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc042534.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 27049.9 Da    PI: 9.1877
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc042534.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.81.2e-27959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           k+ien++nrqvt+skRrng++KKA+EL vLCda+v++i++s t+kl+ey+s
  Cse_sc042534.1_g010.1  9 KKIENSTNRQVTYSKRRNGLFKKASELTVLCDAKVSIIMVSCTDKLHEYIS 59
                           68***********************************************86 PP
2K-box75.31.7e-2571169199
                  K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                            yqk++g +l++++++++q+el++ k+ ++nL++++R++lG++Le+L ++eL  Le++ ++++  iR++K +++ +++e+++kk +++q
  Cse_sc042534.1_g010.1  71 YQKTTGIDLWNSHYQKMQEELRQQKEVNRNLRKQIRQRLGDCLEDLGFEELLALEKDSQEAVYIIRERKLKVIGNKVETSKKKVRSAQ 158
                            89999*********************************************************************************** PP

                  K-box  89 eenkaLrkkle 99 
                            +  k+L ++++
  Cse_sc042534.1_g010.1 159 DVYKKLMHEFD 169
                            ******99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MARGKIQIKK IENSTNRQVT YSKRRNGLFK KASELTVLCD AKVSIIMVSC TDKLHEYISP  60
SITMKQFFNQ YQKTTGIDLW NSHYQKMQEE LRQQKEVNRN LRKQIRQRLG DCLEDLGFEE  120
LLALEKDSQE AVYIIRERKL KVIGNKVETS KKKVRSAQDV YKKLMHEFDI RGEDPQYGMI  180
EDGVDYENVY GYPHMDAQHI LTLRLQPDHP NNLHAIATGA TTSSDLTTYG LFG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.17e-87MIKC_MADS family protein