PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc042916.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 244aa    MW: 27957.6 Da    PI: 6.257
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc042916.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.4e-171360148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd ll+++++++G g W++++ + g++R++k+c++rw++yl
  Cse_sc042916.1_g030.1 13 KGAWTAEEDMLLKKCIERYGEGKWHLVPLKAGLNRCRKSCRLRWLNYL 60
                           79********************************************97 PP
2Myb_DNA-binding43.85.9e-1466110147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg + ++E +l ++++++lG++ W++Ia +++ gRt++++k++w+++
  Cse_sc042916.1_g030.1  66 RGDFGEDELDLMLRLHNLLGNK-WSLIAGRIP-GRTANDVKNYWNTH 110
                            78999*****************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MRPSGITGLK LRKGAWTAEE DMLLKKCIER YGEGKWHLVP LKAGLNRCRK SCRLRWLNYL  60
RPNIKRGDFG EDELDLMLRL HNLLGNKWSL IAGRIPGRTA NDVKNYWNTH IRSRSNKQKL  120
GTKDSELLQQ HAKVSVTKPK PRTFSRTQDC NQPISANEDC NVVTSTDDGV NNALDIPQGL  180
MSSPDDKIDE YLDELLNDEA NEFEGEIDWT LDGSLVNGED LRLGKDLFHL PDEVMWDFLH  240
SEQL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-65MYB family protein