PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc045434.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

CO-like

Protein Properties

Length: 375aa MW: 41894.9 Da PI: 6.5715

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc045434.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.2	1.6e-08	22	56	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkgHtv 39 + C+++++ + l+C+++ ++lC C +++H gHt+ Cse_sc045434.1_g010.1 22 KSCDTCKNAVALLYCRKDTTFLCLACDVKIH-GHTR 56 68****************************8.7764 PP
2	zf-B_box	27.6	5.8e-09	60	105	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C +H+ H++vp+ Cse_sc045434.1_g010.1 60 VWMCEVCEQAPASVTCKADAAALCVTCDRDIHSAnplsrrHDRVPV 105 689*****************************66899999999986 PP
3	CCT	71	3e-24	293	336	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Cse_sc045434.1_g010.1 293 REARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 336 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MRMVETGGAV KCFPVGWNVP AKSCDTCKNA VALLYCRKDT TFLCLACDVK IHGHTRHERV 60 WMCEVCEQAP ASVTCKADAA ALCVTCDRDI HSANPLSRRH DRVPVVPFYD SADILAKSAA 120 CTFLDYNSNG NSNSDELTSS ITNDDVINWG IAPETIDIDV KFPCDESPDI KSIEMLFPES 180 DQLLDFDFPS QTDVKIHSHF HDSINDSVVP FQLSPPANRY EIDFTRSNIK SYNKNSYLTQ 240 SISHSVSSSS IDAGIVPEGN SMSEISHPFA LHVNNNSDLS ASQPPTQLSG SDREARVMRY 300 REKRKNRKFE KTIRYASRKA YAETRPRIKG RFAKRTDSEP DTDRWLFTTT SGVGSKNSYG 360 LEVEYGVVPS YCRAL

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MRMVETGGAV KCFPVGWNVP AKSCDTCKNA VALLYCRKDT TFLCLACDVK IHGHTRHERV  60
WMCEVCEQAP ASVTCKADAA ALCVTCDRDI HSANPLSRRH DRVPVVPFYD SADILAKSAA  120
CTFLDYNSNG NSNSDELTSS ITNDDVINWG IAPETIDIDV KFPCDESPDI KSIEMLFPES  180
DQLLDFDFPS QTDVKIHSHF HDSINDSVVP FQLSPPANRY EIDFTRSNIK SYNKNSYLTQ  240
SISHSVSSSS IDAGIVPEGN SMSEISHPFA LHVNNNSDLS ASQPPTQLSG SDREARVMRY  300
REKRKNRKFE KTIRYASRKA YAETRPRIKG RFAKRTDSEP DTDRWLFTTT SGVGSKNSYG  360
LEVEYGVVPS YCRAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	1e-94	CO-like family protein