PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc045910.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

LSD

Protein Properties

Length: 151aa MW: 16696.5 Da PI: 9.2557

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc045910.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	32.6	1.4e-10	50	73	2	25
zf-LSD1 2 ggCrtlLsYPrGApsVRCalCdtV 25 +gCr+lL YP GA+sV+ alC++V Cse_sc045910.1_g010.1 50 SGCRNLLLYPVGATSVCYALCNAV 73 59*********************9 PP
2	zf-LSD1	25.5	2.1e-08	88	102	1	15
zf-LSD1 1 CggCrtlLsYPrGAp 15 CggC+tlL+Y rGA+ Cse_sc045910.1_g010.1 88 CGGCHTLLMYIRGAT 102 **************8 PP
3	zf-LSD1	32.7	1.2e-10	111	131	1	21
zf-LSD1 1 CggCrtlLsYPrGApsVRCal 21 Cg+Cr lL+Y +GA++V+Ca+ Cse_sc045910.1_g010.1 111 CGNCRMLLMYQYGARYVKCAV 131 *******************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence
MPEIPDIADN LEKLTGFTKY KYTKFWKSRQ MPADYPISMR KGSQSQLVWS GCRNLLLYPV 60 GATSVCYALC NAVTAVPPPG TEMAQLVCGG CHTLLMYIRG ATTNHVAHVN CGNCRMLLMY 120 QYGARYVKCA VFQFITSVGA STSATKQKFT T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	1e-60	LSD family protein