PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc046968.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 541aa MW: 59108.1 Da PI: 8.6166

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc046968.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.3	4.6e-07	235	255	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C Gd C +aHg Cse_sc046968.1_g020.1 235 PCPEFRK-GSCVNGDACEYAHG 255 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MEGKFQDQKF KVTLKCSKVL ELAAVDDVSG FISEVEKNMI AIDEVGFWYG RSNSSILKMG 60 FCERTPLMIA SVYGSIHVIK YIISNKKTNV NKSSGSDGVT ALHCAAAGGS VMSVEVVKLL 120 LDAGADVSLT DANGNKPGDL IARGVKSSVR KGLEMLLKGF VSEEIVSAKK EYPVDVSMPD 180 INNGLYGSDE FRMYTFKVKP CSRAYTHDWT ECPFVHPGEN ARRRDPKKFN YSCVPCPEFR 240 KGSCVNGDAC EYAHGVFESW LHPAQYKTRL CKDEIGCARK VCFFAHRVDE MRPLYASTGS 300 AIPSVKSGDM SPKSPSPMAL TSTPPMSPSI SASQVHGWQN KMNHLTPPTL QLSGSRLRMG 360 LNARDMKQQM IDDFSSNLYT NSNLDDVFGS GLSGNYSSPM RKPVNYTFDS SAAVAQAVMN 420 SRAGAFSKQR SQSFIDRGAT GATGAPFSQW GSPDGKLDWG FNGEEAKKLR KSASFGFRNG 480 VPTNVGHEPD VSWVNTLVKD VSSVGVGLYS SSEKQRYSVG GGDKLPPWVE QMFIEQERLV 540 A

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MEGKFQDQKF KVTLKCSKVL ELAAVDDVSG FISEVEKNMI AIDEVGFWYG RSNSSILKMG  60
FCERTPLMIA SVYGSIHVIK YIISNKKTNV NKSSGSDGVT ALHCAAAGGS VMSVEVVKLL  120
LDAGADVSLT DANGNKPGDL IARGVKSSVR KGLEMLLKGF VSEEIVSAKK EYPVDVSMPD  180
INNGLYGSDE FRMYTFKVKP CSRAYTHDWT ECPFVHPGEN ARRRDPKKFN YSCVPCPEFR  240
KGSCVNGDAC EYAHGVFESW LHPAQYKTRL CKDEIGCARK VCFFAHRVDE MRPLYASTGS  300
AIPSVKSGDM SPKSPSPMAL TSTPPMSPSI SASQVHGWQN KMNHLTPPTL QLSGSRLRMG  360
LNARDMKQQM IDDFSSNLYT NSNLDDVFGS GLSGNYSSPM RKPVNYTFDS SAAVAQAVMN  420
SRAGAFSKQR SQSFIDRGAT GATGAPFSQW GSPDGKLDWG FNGEEAKKLR KSASFGFRNG  480
VPTNVGHEPD VSWVNTLVKD VSSVGVGLYS SSEKQRYSVG GGDKLPPWVE QMFIEQERLV  540
A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein