PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc048409.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family HD-ZIP
Protein Properties Length: 178aa    MW: 20683.2 Da    PI: 8.7139
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc048409.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.7e-182579357
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
               Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                           ++ ++t+eq++ Le+ F+ n++++ +++ +LA++lg++ rq+ +W+qN+Ra++++
  Cse_sc048409.1_g030.1 25 NKKRLTNEQVKLLETSFNFNNKLDSTRKSQLAQELGVPARQIAIWYQNKRARWRN 79
                           67789************************************************95 PP
2HD-ZIP_I/II101.76.6e-3325116293
            HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                            +k+rl++eqvklLE+sF+ ++kL+++rK++la+eLg+ +rq+a+W+qn+RAR++++ lE+++++L++++++++++++rLe+eve+L+ 
  Cse_sc048409.1_g030.1  25 NKKRLTNEQVKLLETSFNFNNKLDSTRKSQLAQELGVPARQIAIWYQNKRARWRNQSLETEHKMLQDRLERVSSDKNRLEREVERLQG 112
                            79*************************************************************************************9 PP

            HD-ZIP_I/II  90 elke 93 
                            el++
  Cse_sc048409.1_g030.1 113 ELEK 116
                            9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    
MHILSLDLHP LNMDFSQPKK HPKSNKKRLT NEQVKLLETS FNFNNKLDST RKSQLAQELG  60
VPARQIAIWY QNKRARWRNQ SLETEHKMLQ DRLERVSSDK NRLEREVERL QGELEKAKDM  120
LVSSKTINYA SLPSFSSSCD EVASSSLLGD HGDFYVCFDD HQFDHKSNGH DFFARSTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.12e-32HD-ZIP family protein