PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc050191.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family Nin-like
Protein Properties Length: 316aa    MW: 36154.8 Da    PI: 10.3039
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc050191.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK48.81.4e-1578127350
                 RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWP..hRkik 50 
                            +++++ed++++  +pi +A+k Lgv+ ++LKriCR+++I+ WP  hR +k
  Cse_sc050191.1_g030.1  78 ESVTMEDIQQNIGKPIGEASKRLGVSRSTLKRICRKLNIPSWPkpHRNMK 127
                            6799**************************************64488887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MEQRERKYDA SSTLLLLQQQ QTKKQSRNLV ISSSSALSYR HELPEKSHML SNTRTTTSDY  60
VAEEKRVSAK RRRKPKMESV TMEDIQQNIG KPIGEASKRL GVSRSTLKRI CRKLNIPSWP  120
KPHRNMKYKH LSIHVVVLIL VKVKRWSCSS NRHGFEARWW ICGKHSSFVL SKPYLTIEAH  180
GTLMIASSSK ESDDSIETLH PIPKPPQARS DMLSASPEKS MAKVSQDIRT VTVKATYKDD  240
MIKFQFPLSS GLLELKQEVA RRFMLESTRL HLKYWDEDGD LILVACDADL SILIMPYSAT  300
RVGNNTIKLM VEIADD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.12e-17Nin-like family protein