PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc050531.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 566aa    MW: 64197.5 Da    PI: 9.3366
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc050531.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS301.61.9e-92364011354
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            l++lLl+cA++ ssgdl++a+++L r+s+las +gd+mqRlaa f+ ALa+r+ r +++ly+al+ se  ++n   + +a+++f + +
  Cse_sc050531.1_g010.1  36 LIKLLLTCAKHASSGDLHRADTCLHRISQLASVTGDSMQRLAARFATALANRIIRRWPGLYSALNHSERMSTNLGWARQAHSTFPKSF 123
                            689*******************************************************************99999999999******* PP

                   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                            P++ f++ +  q++++a++ ++ +Hi+D++ + +  W++Llq+L++ p gpp+++iT v+     +k  l  +g  L k A++l++pf
  Cse_sc050531.1_g010.1 124 PFMSFAYAVLTQTLVRAMSWDRVIHIVDLGSGDPQLWAPLLQKLSNGPMGPPHVKITCVSG----NKVLLDDLGTVLLKEAKSLDMPF 207
                            *************************************************************....99********************* PP

                   GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrll...............desvsleserdevLklvkslsPkvvvvveqeadhn 249
                            ++n+l   +l dl+  +L+v+pgEala  ++l+ h ll               +++++ +++  e+Lk+++s+sPk+v +veqe+dhn
  Cse_sc050531.1_g010.1 208 QYNPL-NVTLMDLTQVMLDVRPGEALAFVSILNFHVLLaeddcvdmhftvnmnNDETKENNKMAEFLKMLRSMSPKLVLLVEQESDHN 294
                            ****5.88999999**************************************96666666679************************* PP

                   GRAS 250 sesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                             +++++rf+e l+yysa+fds+++++   +    +ri +E + +g+ei n+vaceg er+erhe+ ++W  r++ aGFkpv+l   a+
  Cse_sc050531.1_g010.1 295 LTRLVDRFVEGLHYYSAIFDSIDTTFTIGEfssYDRIRLEDM-VGQEILNMVACEGLERVERHERIARWVVRFSGAGFKPVHLWLAAM 381
                            ************************98776555799*******.********************************************* PP

                   GRAS 335 kqaklllrkvksdgyrveee 354
                            ++a+ +++  k  gy+v  +
  Cse_sc050531.1_g010.1 382 EEAQQIIESLKPIGYKVVTH 401
                            ***********999*99765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    
MNSSSTTMKP DVTLSLTLPS PDLAHSFKPE ERGVKLIKLL LTCAKHASSG DLHRADTCLH  60
RISQLASVTG DSMQRLAARF ATALANRIIR RWPGLYSALN HSERMSTNLG WARQAHSTFP  120
KSFPFMSFAY AVLTQTLVRA MSWDRVIHIV DLGSGDPQLW APLLQKLSNG PMGPPHVKIT  180
CVSGNKVLLD DLGTVLLKEA KSLDMPFQYN PLNVTLMDLT QVMLDVRPGE ALAFVSILNF  240
HVLLAEDDCV DMHFTVNMNN DETKENNKMA EFLKMLRSMS PKLVLLVEQE SDHNLTRLVD  300
RFVEGLHYYS AIFDSIDTTF TIGEFSSYDR IRLEDMVGQE ILNMVACEGL ERVERHERIA  360
RWVVRFSGAG FKPVHLWLAA MEEAQQIIES LKPIGYKVVT HRPGKKPETS KGKAKKPADP  420
WTKEEEVVLC KAWVYVSKNA ARGNAQNRFK FWEQVIEYFN KETGKNRTYD SINTKWKSRI  480
RNRVENYCAI MENIKNTHGS GENDIDDTSK ALKEYRHWRE KADVAQSPKR ESGTTPARKR  540
RYHSNATSSV VDLRHSPLPS CRSHGP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.17e-91GRAS family protein