PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc052800.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 195aa    MW: 21643.5 Da    PI: 10.4706
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc052800.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.41.4e-2193141149
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                            k+ie+++ rqvtfskRrng++KKA+EL++L++a+ a+++ s+ g+ y +
  Cse_sc052800.1_g010.1  93 KKIEETTSRQVTFSKRRNGLFKKASELCILTGAQMAILVESPGGRCYAF 141
                            68******************************************99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MTDHNRSEQK RLDGNGSEQK TAVAAATTAA ATTAAKMGDD RSTARTLQHS RHSLLRPASR  60
SASGYKATQT NRMMFSDIYL RSTLTCRQKI PIKKIEETTS RQVTFSKRRN GLFKKASELC  120
ILTGAQMAIL VESPGGRCYA FGHPSPDAII DRYMNNNNNT DDNNENMVEK FGVVAELKKT  180
RCKRLCSKPV TKHDG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-24M-type_MADS family protein