PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc053922.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family C3H
Protein Properties Length: 267aa    MW: 29031.8 Da    PI: 8.4242
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc053922.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.53.4e-11237261227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            kt+ C++f++ G+C +G+rC+FaHg+
  Cse_sc053922.1_g020.1 237 KTKMCDYFLK-GQCTFGNRCHFAHGE 261
                            899*******.*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MSFYEMESFS PGVGSKSKPC MKFFSTAGCQ FGEGCHFSHY IPGGYNAASQ FTTMCGPISR  60
KPPMQQPFTN GPAPPTKSKL CNRINTPEGC MFGDKCRFAH SEAEMGGRPS FSYYENPCGP  120
MNFSGYQGRF EPSPAAANFG QSATTKISIE SSLVGPVIGK GGVHSKQICR VTGVKLHVRD  180
HETDPNQKNI ELEGSFDQIK EASAMVQEII MNLGGANEGR KGGGFQQQQP GGRNNIKTKM  240
CDYFLKGQCT FGNRCHFAHG ENELRSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.18e-68C3H family protein