PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc053981.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 138aa    MW: 15970.7 Da    PI: 9.5032
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc053981.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.33.1e-111447740
                           HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                 SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviif 40
                           + rqvt+ kR++g++K  + L +LC+++v+++++
  Cse_sc053981.1_g010.1 14 RARQVTLQKRKAGLIKIMNDLKILCGVDVCLVMY 47
                           579*****************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    
MTRPAMKQFK LDPRARQVTL QKRKAGLIKI MNDLKILCGV DVCLVMYETP DAPAKVWPSH  60
SEAVRLIQEY EDAKMSSPNP ELDPKAFHSL NTRTCLTVKY KSKDEEIAAL LKKRNELMIF  120
KAELDRQINL ELEKNREN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.25e-13M-type_MADS family protein